Factsheet for PGSC0003DMT400063352

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115230.2.1	Tomato	plastid	98.25	98.35
Solyc06g082560.1.1	Tomato	plastid	87.28	93.21
VIT_17s0000g07190.t01	Wine grape	nucleus	87.72	87.82
KRH56831	Soybean	endoplasmic reticulum	85.64	85.73
CDX73074	Canola	cytosol	69.52	85.33
CDX96531	Canola	cytosol	69.52	85.33
KRH54672	Soybean	endoplasmic reticulum	70.29	85.13
Bra015922.1-P	Field mustard	nucleus	84.98	85.07
CDX85823	Canola	nucleus	82.02	84.71
Bra003807.1-P	Field mustard	nucleus	81.25	84.01
CDX68190	Canola	nucleus	73.68	82.45
Os05t0519700-01	Rice	nucleus	82.13	82.13
TraesCS3A01G274400.1	Wheat	cytosol	82.13	82.04
TraesCS3D01G273600.1	Wheat	cytosol	82.02	81.93
TraesCS3B01G308100.1	Wheat	cytosol	82.02	81.93
Zm00001d038806_P001	Maize	nucleus	81.91	81.91
EES19828	Sorghum	nucleus	81.8	81.71
GSMUA_Achr1P13710_001	Banana	cytosol	76.21	81.67
TraesCS1B01G352400.1	Wheat	cytosol, golgi	80.81	80.37
TraesCS1D01G342100.1	Wheat	golgi	80.7	80.17
TraesCS1A01G340100.1	Wheat	nucleus	80.37	79.85
GSMUA_Achr3P16240_001	Banana	cytosol	74.56	79.81
EES01468	Sorghum	nucleus	79.71	79.45
AT4G14670.1	Thale cress	cytosol	47.92	70.14
TraesCS4B01G393100.1	Wheat	cytosol	68.2	68.88
HORVU7Hr1G008950.1	Barley	cytosol, plastid	13.05	50.0
AT4G14675.1	Thale cress	cytosol	8.0	45.91
PGSC0003DMT400003652	Potato	cytosol, plastid	48.68	45.35
PGSC0003DMT400037527	Potato	cytosol	39.58	39.11
PGSC0003DMT400036961	Potato	plastid	39.36	38.81
PGSC0003DMT400054236	Potato	plastid	38.49	38.57
PGSC0003DMT400036893	Potato	plastid	35.86	33.89
PGSC0003DMT400037525	Potato	plastid	3.29	11.81

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:102577597	MapMan:26.4.2.3	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
ProteinID:AAS87593	ProteinID:AAS87593.1	ProteinID:AAS87595	ProteinID:AAS87595.1	InterPro:ATPase_AAA_core	EMBL:AY573845
EMBL:AY573847	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N
InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	InterPro:IPR036628	UniProt:M1CAJ2	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	EnsemblPlantsGene:PGSC0003DMG400024644	PGSC:PGSC0003DMG400024644
EnsemblPlants:PGSC0003DMT400063352	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF146
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0002948A39	RefSeq:XP_006345133.1
SEG:seg	:	:	:	:	:

Description

101 kDa heat shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024644]

Coordinates

chr3:-:55148140..55152302

Molecular Weight (calculated)

101200.0 Da

IEP (calculated)

6.017

GRAVY (calculated)

-0.389

Length

912 amino acids

Sequence
(BLAST)

001: MNPEKFTHKT NEAIAEAHEL AVSAGHAQLT PLHMALALLS DHSGIFWQAI VNAAGSEETA NGVERVFNQA KKKIPSQSPA PDQVPASTSL IKVLRRAQSL
101: QKSRGDSHLA VDLLILGLLE DSQIVDLLKD SGLSAARVKS EVEKLRGKDG KKVESATGDT TFQALKTYGR DLVEQAGKLD PVIGRDEEIR RVIRILSRRT
201: KNNPVLIGEP GVGKTAVVEG LAQRIVRGDV PSNLADVRLI ALDMGALVAG AKYRGEFEER LKAVLKEVED ADGKVILFID EIHLVLGAGR TEGSMDAANL
301: FKPMLARGQL RCIGATTLEE YRKYVEKDAA FERRFQQVYV AEPSVPDTIS ILRGLKEKYE GHHGVKIQDR ALVIAAQLSA RYITGRHLPD KAIDLVDEAC
401: ANVRVQLDSQ PEEIDNLERK RIQLEVEHHA LEKEKDKASK ARLVEVRKEL DDLRDKLQPL MMRYKKEKER IDELRRLKQK RDELTYALQE AERRYDLARA
501: ADLRYGAIQE VEAAIANLES STDESTMLTE TVGPDQIAEV VSRWTGIPVS RLGQNEKEKL IGLADRLHQR VVGQDQAVKA VSEAVLRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDDKLM VRIDMSEYME QHSVARLIGA PPGYVGHEEG GQLTEAVRRR PYSVVLFDEV EKAHPTVFNA LLQVLDDGRL
701: TDGQGRTVDF TNTVIIMTSN LGAEYLLSGL SGKCTMEKAR EMVMQEVRKQ FKPELLNRLD EIVVFDPLSH DQLRQVCRHQ LKDVAGRLAE MGIALGVTEA
801: ALDVILAQSY DPVYGARPIR RWLEKKVVTE LSKMLVKEEI DENSTVYVDA GRGGKDLTYR VENNGGLVNA ATGKKSDVLI QLPNGQRNDA AQAVKKMRIE
901: EIDDEDDEMA AD

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.