Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G50920.1 | Thale cress | plastid | 65.4 | 24.0 |
| AT3G48870.3 | Thale cress | cytosol, plastid | 64.52 | 23.11 |
| AT4G14670.1 | Thale cress | cytosol | 28.45 | 15.57 |
| KRH46928 | Soybean | endoplasmic reticulum | 5.28 | 15.13 |
| Zm00001d029672_P004 | Maize | plastid | 10.26 | 14.96 |
| AT1G74310.1 | Thale cress | nucleus | 33.14 | 12.4 |
| AT5G51070.1 | Thale cress | plastid | 33.72 | 12.17 |
| AT2G25140.1 | Thale cress | mitochondrion | 34.02 | 12.03 |
| AT5G15450.1 | Thale cress | plastid | 32.26 | 11.36 |
| AT4G14675.1 | Thale cress | cytosol | 1.76 | 3.77 |
Protein Annotations
| Gene3D:1.10.1780.10 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:823685 | ProteinID:AEE78032.1 | ArrayExpress:AT3G45450 |
| EnsemblPlantsGene:AT3G45450 | RefSeq:AT3G45450 | TAIR:AT3G45450 | RefSeq:AT3G45450-TAIR-G | EnsemblPlants:AT3G45450.1 | TAIR:AT3G45450.1 |
| InterPro:ATPase_AAA_core | Unigene:At.53754 | ProteinID:CAB75474.1 | InterPro:Clp_N | InterPro:Clp_N_dom_sf | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009536 | GO:GO:0009570 |
| GO:GO:0009941 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR036628 | RefSeq:NP_190131.1 | InterPro:P-loop_NTPase |
| PFAM:PF00004 | PFAM:PF02861 | PANTHER:PTHR43572 | PANTHER:PTHR43572:SF8 | UniProt:Q9M1G2 | SUPFAM:SSF52540 |
| SUPFAM:SSF81923 | UniParc:UPI00000A0FEF | : | : | : | : |
Description
ClpC-like protein [Source:UniProtKB/TrEMBL;Acc:Q9M1G2]
Coordinates
chr3:+:16673146..16674880
Molecular Weight (calculated)
37348.2 Da
IEP (calculated)
8.730
GRAVY (calculated)
-0.226
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MFERFTEKAI KVITLAQEEA RRLGYNFFGT EHILLSLIGE GTGIAAKVLK SMGINLKDAR VEVEKIIGRG SGFVVVEIPF TPRKACAGFV TRGSSTTRHK
101: GIAVRVLEIL GADPSNIRTQ VNAPILVNSQ QALVAEVMET ATWQVGNTRR GKLDPVVGRQ PQIKRVVQIL ARRTCRNNAC LIGKPGVGKR AIAEGIAQRI
201: ASGDVPETIK GKMNVAGNCG WNEIRWRSRG KIEEVYGQSD DIILFIDEMH LLIGAGAVEG AIDAANILKP ALERCELQYR KHIENDPALE RRFQPVKVPE
301: PTVEEAIQIT TVLAKGKEVN KADNEAEEGR PTVTEADNEA E
101: GIAVRVLEIL GADPSNIRTQ VNAPILVNSQ QALVAEVMET ATWQVGNTRR GKLDPVVGRQ PQIKRVVQIL ARRTCRNNAC LIGKPGVGKR AIAEGIAQRI
201: ASGDVPETIK GKMNVAGNCG WNEIRWRSRG KIEEVYGQSD DIILFIDEMH LLIGAGAVEG AIDAANILKP ALERCELQYR KHIENDPALE RRFQPVKVPE
301: PTVEEAIQIT TVLAKGKEVN KADNEAEEGR PTVTEADNEA E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.