Factsheet for Solyc06g011380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25140.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT2G25140.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT2G25140.1	Solyc10g006000.2.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52355	Soybean	cytosol, mitochondrion	73.17	23.04
GSMUA_Achr9P22420_001	Banana	cytosol	84.88	19.71
Bra032044.1-P	Field mustard	mitochondrion	71.71	18.51
CDY53470	Canola	mitochondrion	71.22	18.41
VIT_04s0008g05870.t01	Wine grape	mitochondrion	86.34	18.4
KRH61688	Soybean	mitochondrion	86.83	18.28
AT2G25140.1	Thale cress	mitochondrion	83.9	17.84
CDX76768	Canola	mitochondrion	83.41	17.57
Bra007816.1-P	Field mustard	mitochondrion	82.93	17.45
CDY56280	Canola	mitochondrion	82.93	17.45
CDY68892	Canola	mitochondrion, plastid	69.27	17.13
HORVU6Hr1G028690.1	Barley	mitochondrion	81.95	17.07
EES06386	Sorghum	mitochondrion	82.44	17.07
Os02t0181900-01	Rice	mitochondrion	81.46	16.99
TraesCS6A01G146400.1	Wheat	mitochondrion	81.46	16.85
TraesCS6B01G174500.1	Wheat	mitochondrion	81.46	16.85
TraesCS6D01G135600.1	Wheat	golgi	80.98	16.75
Solyc02g088610.2.1	Tomato	plastid	78.05	16.33
Solyc06g082560.1.1	Tomato	plastid	62.93	15.11
Solyc03g115230.2.1	Tomato	plastid	66.83	15.04
Zm00001d008786_P001	Maize	plastid	12.2	14.04
Solyc12g042060.1.1	Tomato	plastid	58.54	13.0
Solyc03g118340.2.1	Tomato	nucleus	57.56	12.74
Solyc03g117950.2.1	Tomato	nucleus	47.8	10.17
Solyc06g011400.2.1	Tomato	nucleus	6.83	2.65
Solyc06g011370.2.1	Tomato	plastid	2.44	1.68
CDY64721	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc06g011380.2.1	EnsemblPlantsGene:Solyc06g011380.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:ClpA/B_CS1	InterPro:P-loop_NTPase	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86
PFAM:PF00004	ScanProsite:PS00870	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0002767271	UniProt:K4C465
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:6771026..6773535

Molecular Weight (calculated)

22757.7 Da

IEP (calculated)

5.804

GRAVY (calculated)

-0.108

Length

205 amino acids

Sequence
(BLAST)

001: MENAINNRVS IKMEEILLSC EKEDIVLLAQ RIVRGDVPEP LMNRKLISLD MGALLAGAKY RGDFEERLKA VLKEVSASNG QIILFIDEIH TVVGAGATSG
101: AMDAGNLLKP MLGRGELRCI GATTLNEYRK YIEKDPALER RFQQVYCGQP SVEDTISILR GLRERYELHH GVKISDSALV SAAVLADRYI TERFLPDKAV
201: TTEVP

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.