Factsheet for Bra007816.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010432.1-P
Bra025315.1-P
Bra026415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25140.1	Bra025315.1-P	AT3G27960.1	21798944
AT2G25140.1	Bra010432.1-P	AT4G26630.1	25387881
AT2G25140.1	Bra026415.1-P	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56280	Canola	mitochondrion	99.9	99.9
CDX76768	Canola	mitochondrion	98.67	98.77
AT2G25140.1	Thale cress	mitochondrion	85.01	85.89
Solyc06g011380.2.1	Tomato	cytosol, plastid	17.45	82.93
GSMUA_Achr9P22420_001	Banana	cytosol	74.02	81.65
KRH52355	Soybean	cytosol, mitochondrion	53.7	80.34
KRH61688	Soybean	mitochondrion	79.06	79.06
VIT_04s0008g05870.t01	Wine grape	mitochondrion	77.41	78.38
Bra032044.1-P	Field mustard	mitochondrion	60.88	74.69
EES06386	Sorghum	mitochondrion	75.67	74.44
Os02t0181900-01	Rice	mitochondrion	74.44	73.75
HORVU6Hr1G028690.1	Barley	mitochondrion	74.23	73.48
TraesCS6B01G174500.1	Wheat	mitochondrion	73.82	72.55
TraesCS6D01G135600.1	Wheat	golgi	73.61	72.35
TraesCS6A01G146400.1	Wheat	mitochondrion	73.51	72.25
Bra023518.1-P	Field mustard	plastid	66.22	66.98
Bra008698.1-P	Field mustard	plastid	65.81	65.88
Bra003807.1-P	Field mustard	nucleus	42.71	47.17
Bra015922.1-P	Field mustard	nucleus	43.84	46.87
Bra018030.1-P	Field mustard	mitochondrion	38.91	42.68
Bra022751.1-P	Field mustard	plastid	39.73	41.66
Bra029922.1-P	Field mustard	mitochondrion	39.43	41.38
Bra029193.1-P	Field mustard	plastid	35.32	36.48

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
EnsemblPlantsGene:Bra007816	EnsemblPlants:Bra007816.1	EnsemblPlants:Bra007816.1-P	InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628	GO:GO:0009941	GO:GO:0009987
GO:GO:0016485	GO:GO:0019538	GO:GO:0042026	InterPro:IPR036628	UniProt:M4CUC2	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	TIGRFAMs:TIGR03346	UniParc:UPI0002542D02	SEG:seg	:	:

Description

AT2G25140 (E=0.0) HSP98.7, CLPB-M, CLPB4 | CLPB4 (CASEIN LYTIC PROTEINASE B4); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding

Coordinates

chrA09:+:31026381..31030007

Molecular Weight (calculated)

109302.0 Da

IEP (calculated)

6.657

GRAVY (calculated)

-0.403

Length

974 amino acids

Sequence
(BLAST)

001: MASRRLSKST ASAAIRAYNA FSTPSLLLRS RAISAASAHH FTSRSSPTSS LLRPNSLIGA PGNAANSITH GRQLLPLSFQ FLSPRRFSAT AAQTNQNSYT
101: EMAWEGILNA FDAARVSKQQ IVESEHLMKA LLEQKDGLAR RIFAKAGIDN SSVLQATDAF ISTQPKVTGD TSGQVLGSSL STVLQNAERY KKEFQDDYVS
201: VEHLLLAFYS DKRFGQEFFK NLKLKEEALK EVVKEVRGSQ RVTDQNPEGK YDALEKYGND LTEMARRGKL DPVIGRDDEI RRCIQILCRR TKNNPVIIGE
301: PGVGKTAIAE GLAQRIVRGD VPEPLMNRKL ISLDMGSLLA GAKFRGDFEE RLKAVLKEVT ASNGQTILFI DEIHTVVGAG ATGGAMDASN LLKPMLGRGE
401: LRCIGATTLT EYRKYIEKDP ALERRFQQVL CGQPSVEDTI SILRGLRERY ELHHGVKISD GSLVSAAVLS DRYITERFLP DKAIDLVDEA AAKLKMEITS
501: KPTELDEIDR AVIKLEMEKL SLKNDTDKAS KERLHKIEND LTALKEKQKE LSDQWEQEKS LMTRIRSFKE EIDRVNLEIE SAEREYDLQR AAELKYGTLM
601: SLQRQLEEAE KNLTKFRESG QSLLREEVTD LDIAEVVSKW TGIPLSNLQQ SEREKLVMLE QVLHKRVVGQ DMAVKSVSDA IRRSRAGLSD PNRPIASFMF
701: MGPTGVGKTE LAKALAGYLF NTENAIVRID MSEYMEKFSV SRLVGAPPGY VGYEEGGQLT EAVRRRPYSV VLFDEIEKAH PDVFNILLQL LDDGRITDSQ
801: GRRVSFTNCV VIMTSNIGSH HILETLGNSE DGKEAVYELM KRQVVDLARQ TFRPEFMNRI DEYIVFQPLD SKEISKIVEL QLERVKNRME QKKIKLHYTK
901: EAVDLLSQLG FDPNYGARPV KRVIQQMVEN EIAVEVLKGD FAEEDTILLD VDQTSNKLVI KKLENNAPIE EMAA

Best Arabidopsis Sequence Match ( AT2G25140.1 )
(BLAST)

001: MALRRLSKSV SSAIKAQYTL SRPSPLLRSR SLSSSPHYTS IGRPTNSFIG KINNSSITHA TTTHGQLFPL SSPRRFCTTT AQVNQNEFTE MAWEGLINAF
101: DAARESKQQI VESEHLMKAL LEQKDGMARK IFTKAGIDNS SVLQATDLFI SKQPTVSDAS GQRLGSSLSV ILENAKRHKK DMLDSYVSVE HFLLAYYSDT
201: RFGQEFFRDM KLDIQVLKDA IKDVRGDQRV TDRNPESKYQ ALEKYGNDLT EMARRGKLDP VIGRDDEIRR CIQILCRRTK NNPVIIGEPG VGKTAIAEGL
301: AQRIVRGDVP EPLMNRKLIS LDMGSLLAGA KFRGDFEERL KAVMKEVSAS NGQTILFIDE IHTVVGAGAM DGAMDASNLL KPMLGRGELR CIGATTLTEY
401: RKYIEKDPAL ERRFQQVLCV QPSVEDTISI LRGLRERYEL HHGVTISDSA LVSAAVLADR YITERFLPDK AIDLVDEAGA KLKMEITSKP TELDGIDRAV
501: IKLEMEKLSL KNDTDKASKE RLQKIENDLS TLKQKQKELN VQWEKEKSLM TKIRSFKEEI DRVNLEIESA EREYDLNRAA ELKYGTLLSL QRQLEEAEKN
601: LTNFRQFGQS LLREVVTDLD IAEIVSKWTG IPLSNLQQSE REKLVMLEEV LHHRVIGQDM AVKSVADAIR RSRAGLSDPN RPIASFMFMG PTGVGKTELA
701: KALAGYLFNT ENAIVRVDMS EYMEKHSVSR LVGAPPGYVG YEEGGQLTEV VRRRPYSVVL FDEIEKAHPD VFNILLQLLD DGRITDSQGR TVSFKNCVVI
801: MTSNIGSHHI LETLRNNEDS KEAVYEIMKR QVVELARQNF RPEFMNRIDE YIVFQPLDSN EISKIVELQM RRVKNSLEQK KIKLQYTKEA VDLLAQLGFD
901: PNYGARPVKR VIQQMVENEI AVGILKGDFA EEDTVLVDVD HLASDNKLVI KKLESNASAE EMAA

Arabidopsis Description

CLPB4Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.