CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDX89318
CDX94304
CDX97358
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25140.1	CDX86457	AT3G27960.1	21798944
AT2G25140.1	CDY58518	AT3G27960.1	21798944
AT2G25140.1	CDX89318	AT4G26630.1	25387881
AT2G25140.1	CDX94304	AT4G26630.1	25387881
AT2G25140.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56280	Canola	mitochondrion	98.87	98.77
Bra007816.1-P	Field mustard	mitochondrion	98.77	98.67
AT2G25140.1	Thale cress	mitochondrion	84.99	85.79
Solyc06g011380.2.1	Tomato	cytosol, plastid	17.57	83.41
GSMUA_Achr9P22420_001	Banana	cytosol	74.1	81.65
KRH52355	Soybean	cytosol, mitochondrion	53.65	80.18
CDY64721	Canola	cytosol	20.04	79.92
KRH61688	Soybean	mitochondrion	78.83	78.75
VIT_04s0008g05870.t01	Wine grape	mitochondrion	77.29	78.17
EES06386	Sorghum	mitochondrion	75.85	74.55
CDY53470	Canola	mitochondrion	60.74	74.53
Os02t0181900-01	Rice	mitochondrion	74.61	73.86
HORVU6Hr1G028690.1	Barley	mitochondrion	74.41	73.58
CDY68892	Canola	mitochondrion, plastid	62.18	72.98
TraesCS6B01G174500.1	Wheat	mitochondrion	74.0	72.65
TraesCS6D01G135600.1	Wheat	golgi	73.79	72.45
TraesCS6A01G146400.1	Wheat	mitochondrion	73.69	72.35
CDX85551	Canola	plastid	44.91	66.82
CDX90991	Canola	plastid	66.19	66.81
CDX69524	Canola	plastid	65.98	65.98
CDY26423	Canola	plastid	65.78	65.78
CDX85552	Canola	cytosol	16.44	62.75
CDX73074	Canola	cytosol	37.41	48.99
CDX96531	Canola	cytosol	37.31	48.86
CDX68190	Canola	nucleus	40.39	48.22
CDX85823	Canola	nucleus	42.86	47.23
CDX84888	Canola	cytosol	38.85	45.71
CDY64710	Canola	cytosol	38.34	45.38
CDY45800	Canola	plastid	39.77	42.02
CDX83052	Canola	mitochondrion	39.36	41.32
CDY05878	Canola	mitochondrion	39.57	41.31
CDX68504	Canola	mitochondrion	39.36	41.27
CDX71686	Canola	plastid	35.46	37.02
CDY32646	Canola	plastid	35.46	36.94
CDY38846	Canola	plastid	35.25	36.84

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	GO:A0A078CNV5	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlants:CDX76768	ProteinID:CDX76768	ProteinID:CDX76768.1	InterPro:Chaperonin_ClpB	InterPro:ClpA/B
InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408
GO:GO:0009628	GO:GO:0009987	GO:GO:0019538	GO:GO:0042026	EnsemblPlantsGene:GSBRNA2T00127262001	InterPro:IPR036628
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	TIGRFAMs:TIGR03346	UniParc:UPI0004EEDC17	SEG:seg	:

Description

BnaC08g33540D

Coordinates

chrLK031808:+:971864..975870

Molecular Weight (calculated)

109320.0 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.388

Length

973 amino acids

Sequence
(BLAST)

001: MASRRLSKSA SAAIRAYHAF STPSLLLRHR AISAASAHHF TSRSSPTSSL LLPNFSIGAP VNAANSIAHG RQLLPLPFQF LSPRRFSATA AQTNQNSYTE
101: MAWEGILNAF DAARVSKQQI VESEHLMKAL LEQKDGLARR IFAKAGIDNS SVLQATDLFI STQPKVTGDT SGQVLGSSLS TVLQNAERYK KEFQDDYVSV
201: EHLLLAFYSD KRFGQEFFKN LKLKEEALKE VIKDVRGSQR VTDQNPEGKY DALEKYGNDL TEMARRGKLD PVIGRDDEIR RCIQILCRRT KNNPVIIGEP
301: GVGKTAIAEG LAQRIVRGDV PEPLMNRKLI SLDMGSLLAG AKFRGDFEER LKAVLKEVTA SNGQTILFID EIHTVVGAGA TGGAMDASNL LKPMLGRGEL
401: RCIGATTLTE YRKYIEKDPA LERRFQQVLC GQPSVEDTIS ILRGLRERYE LHHGVKISDG SLVSAAVLSD RYITERFLPD KAIDLVDEAA AKLKMEITSK
501: PTELDEIDRA VIKLEMEKLS LKNDTDKASK ERLHKIENDL TALKEKQKEL SDQWEQEKSL MTRIRSFKEE IDRVNLEIES AEREYDLQRA AELKYGTLMS
601: LQRQLEEAEK NLTKFRESGQ SLLREEVTDL DIAEVVSKWT GIPLSNLQQS EREKLVMLEQ VLHKRVVGQD MAVKSVSDAI RRSRAGLSDP NRPIASFMFM
701: GPTGVGKTEL AKALAGYLFN TENAIVRIDM SEYMEKFSVS RLVGAPPGYV GYEEGGQLTE AVRRRPYSVV LFDEIEKAHP DVFNILLQLL DDGRITDSQG
801: RRVSFTNCVV IMTSNIGSHH ILETLGNSED GKEAVYELMK RQVVDLARQT FRPEFMNRID EYIVFQPLDS KEISKIVELQ LERVKNRMEQ KKIKLQYTKE
901: AVDLLSQLGF DPNYGARPVK RVIQQMVENE IAVEVLKGDF AEEDTILLDV DQTSNKLVIK KLENNAPIEE MAA

Best Arabidopsis Sequence Match ( AT2G25140.1 )
(BLAST)

001: MALRRLSKSV SSAIKAQYTL SRPSPLLRSR SLSSSPHYTS IGRPTNSFIG KINNSSITHA TTTHGQLFPL SSPRRFCTTT AQVNQNEFTE MAWEGLINAF
101: DAARESKQQI VESEHLMKAL LEQKDGMARK IFTKAGIDNS SVLQATDLFI SKQPTVSDAS GQRLGSSLSV ILENAKRHKK DMLDSYVSVE HFLLAYYSDT
201: RFGQEFFRDM KLDIQVLKDA IKDVRGDQRV TDRNPESKYQ ALEKYGNDLT EMARRGKLDP VIGRDDEIRR CIQILCRRTK NNPVIIGEPG VGKTAIAEGL
301: AQRIVRGDVP EPLMNRKLIS LDMGSLLAGA KFRGDFEERL KAVMKEVSAS NGQTILFIDE IHTVVGAGAM DGAMDASNLL KPMLGRGELR CIGATTLTEY
401: RKYIEKDPAL ERRFQQVLCV QPSVEDTISI LRGLRERYEL HHGVTISDSA LVSAAVLADR YITERFLPDK AIDLVDEAGA KLKMEITSKP TELDGIDRAV
501: IKLEMEKLSL KNDTDKASKE RLQKIENDLS TLKQKQKELN VQWEKEKSLM TKIRSFKEEI DRVNLEIESA EREYDLNRAA ELKYGTLLSL QRQLEEAEKN
601: LTNFRQFGQS LLREVVTDLD IAEIVSKWTG IPLSNLQQSE REKLVMLEEV LHHRVIGQDM AVKSVADAIR RSRAGLSDPN RPIASFMFMG PTGVGKTELA
701: KALAGYLFNT ENAIVRVDMS EYMEKHSVSR LVGAPPGYVG YEEGGQLTEV VRRRPYSVVL FDEIEKAHPD VFNILLQLLD DGRITDSQGR TVSFKNCVVI
801: MTSNIGSHHI LETLRNNEDS KEAVYEIMKR QVVELARQNF RPEFMNRIDE YIVFQPLDSN EISKIVELQM RRVKNSLEQK KIKLQYTKEA VDLLAQLGFD
901: PNYGARPVKR VIQQMVENEI AVGILKGDFA EEDTVLVDVD HLASDNKLVI KKLESNASAE EMAA

Arabidopsis Description

CLPB4Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.