CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64710	Canola	cytosol	88.15	99.51
Bra029922.1-P	Field mustard	mitochondrion	99.46	99.46
CDX83052	Canola	mitochondrion	99.25	99.35
CDY05878	Canola	mitochondrion	97.31	96.89
GSMUA_Achr6P08050_001	Banana	cytosol	13.04	95.28
CDX84888	Canola	cytosol	82.65	92.74
AT3G48870.3	Thale cress	cytosol, plastid	92.24	89.92
GSMUA_Achr6P08040_001	Banana	cytosol	61.21	88.2
Os04t0397100-01	Rice	plastid	37.72	86.85
CDY45800	Canola	plastid	85.56	86.21
KRH54115	Soybean	plastid	85.34	85.9
KRH63851	Soybean	plastid	85.24	85.79
Solyc12g042060.1.1	Tomato	plastid	85.24	85.7
PGSC0003DMT400037527	Potato	cytosol	85.13	85.59
KRH59753	Soybean	endoplasmic reticulum	84.7	85.53
KRH41069	Soybean	mitochondrion, plastid	84.38	85.2
PGSC0003DMT400036961	Potato	plastid	84.59	84.86
GSMUA_Achr3P18630_001	Banana	plastid	82.33	84.61
Solyc03g118340.2.1	Tomato	nucleus	84.16	84.34
PGSC0003DMT400054236	Potato	plastid	82.11	83.74
KXG23307	Sorghum	plastid	83.08	83.71
TraesCS2B01G304200.1	Wheat	golgi	82.65	83.64
TraesCS2D01G285800.1	Wheat	plastid	82.65	83.64
TraesCS6D01G183600.2	Wheat	cytosol, plastid	82.54	83.62
HORVU2Hr1G071080.3	Barley	plastid	82.54	83.53
TraesCS6A01G195200.1	Wheat	plastid	82.33	83.41
Zm00001d003894_P004	Maize	plastid	82.76	83.39
Zm00001d024009_P001	Maize	plastid	82.76	83.39
Os12t0230100-01	Rice	plastid	82.54	83.35
Zm00001d025273_P019	Maize	plastid	82.65	83.28
TraesCS2A01G287300.2	Wheat	plastid	80.28	83.24
TraesCS6B01G233800.1	Wheat	plastid	82.11	83.19
EES12052	Sorghum	plastid	82.54	83.17
GSMUA_Achr6P16470_001	Banana	plastid	78.23	82.88
TraesCS5A01G118900.1	Wheat	unclear	81.25	81.96
TraesCS5D01G118700.1	Wheat	plastid	81.25	81.96
TraesCS5B01G112500.1	Wheat	plastid	81.03	81.74
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	85.56	80.94
GSMUA_Achr8P09160_001	Banana	plastid	80.5	80.84
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	80.5	76.77
TraesCS4B01G082900.1	Wheat	mitochondrion	51.62	63.61
GSMUA_AchrUn_...	Banana	plastid	76.19	60.38
CDY64721	Canola	cytosol	12.07	45.9
CDX73074	Canola	cytosol	35.67	44.55
CDX96531	Canola	cytosol	35.45	44.28
CDX85552	Canola	cytosol	12.07	43.92
CDY38846	Canola	plastid	43.43	43.29
CDX71686	Canola	plastid	43.43	43.24
CDY32646	Canola	plastid	43.43	43.15
CDY53470	Canola	mitochondrion	36.53	42.75
CDX68190	Canola	nucleus	36.53	41.6
CDY68892	Canola	mitochondrion, plastid	36.96	41.38
CDX85823	Canola	nucleus	38.25	40.2
CDX90991	Canola	plastid	41.16	39.63
CDY56280	Canola	mitochondrion	41.38	39.43
CDX76768	Canola	mitochondrion	41.27	39.36
CDX69524	Canola	plastid	40.95	39.05
CDY26423	Canola	plastid	40.84	38.95
CDX85551	Canola	plastid	25.0	35.47

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	GO:A0A078BXG1	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlants:CDX68504	ProteinID:CDX68504	ProteinID:CDX68504.1	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00126027001	InterPro:IPR001943	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF8	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0004EECB7E	InterPro:UVR_dom	SEG:seg	:

Description

BnaC01g25820D

Coordinates

chrLK031788:-:2921098..2925287

Molecular Weight (calculated)

102964.0 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.314

Length

928 amino acids

Sequence
(BLAST)

001: MARLLANFTA RPLLGPGRHV QSDEYRKPRR CVKMMYTSQT PVLSIQSFSG LRSANAVDLI ARPAHGFFSK VNLQISSRKG KASRCVTTKA MFERFTEKAI
101: KVIMLSQEEA RRLGHNFVGT EQILLGLIGE GTGIAAKVLK SMGINLKDSR VEVEKIIGRG SGFVAVEIPF TPRAKRVLEL SLEEARQLGH NYIGSEHLLL
201: GLLREGEGVA ARVLENLGVD ASNIRTQVIR MVGENNEVTA SVGGGSSGNS KMPTLEEYGT NLTKLAEEGK LDPVVGRQPQ IERVVQILAR RTKNNPCLIG
301: EPGVGKTAIA EGLAQRIASG DVPETIEGKT VITLDMGLLV AGTKYRGEFE ERLKKLMEEI RQSDDIILFI DEVHTLIGAG AAEGAIDAAN ILKPALARGE
401: LQCIGATTLD EYRKHIEKDP ALERRFQPVK VPEPTVDEAI QILHGLRERY EIHHKLRYTD EALVAAAQLS HQYISDRFLP DKAIDLIDEA GSRVRLRHAQ
501: VPEEARELEK QLRQITKEKN EAVRGQDFEK AGSHRDREIE LRAEIAAVLA KGKEVSKAET EAGEEGGPTV TESDIQHIVS TWTGIPVEKV SSDESSRLLK
601: MEQTLHTRVI GQDEAVKAIS RAIRRARVGL KNPNRPIASF IFSGPTGVGK SELAKALAAY YFGSEEAMIR LDMSEFMERH TVSKLIGSPP GYVGYTEGGQ
701: LTEAVRRRPY TLVLFDEIEK AHPDVFNMML QILEDGRLTD SKGRTVDFKN TLLIMTSNVG SSVIEKGGRR IGFDLDYDEK DSSYNRIKSL VTEELKQYFR
801: PEFLNRLDEM IVFRQLTKLE VKEIADIMLK EVVVRLKDKE IELQVTERFK ERVVDEGFDP SYGARPLRRA IMRLLEDSMA EKMLSREIKD GDSVIVDVDA
901: EGSVVVLNGK SGGGSVAEEA MEDPILVL

Best Arabidopsis Sequence Match ( AT3G48870.3 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.