Factsheet for TraesCS6B01G233800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 16481623
plastid: 16595579
plastid: 18419817
plastid: 22160430
golgi: 23128297

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT5G50920.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT5G50920.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G195200.1	Wheat	plastid	99.34	99.34
TraesCS6D01G183600.2	Wheat	cytosol, plastid	99.24	99.24
GSMUA_Achr6P08050_001	Banana	cytosol	13.54	97.64
TraesCS2B01G304200.1	Wheat	golgi	94.0	93.89
GSMUA_Achr6P08040_001	Banana	cytosol	64.19	91.3
CDX84888	Canola	cytosol	81.99	90.81
CDY64710	Canola	cytosol	79.8	88.93
GSMUA_Achr3P18630_001	Banana	plastid	86.24	87.49
PGSC0003DMT400037527	Potato	cytosol	87.77	87.11
Solyc12g042060.1.1	Tomato	plastid	87.66	87.0
KRH63851	Soybean	plastid	86.24	85.68
KRH54115	Soybean	plastid	86.24	85.68
PGSC0003DMT400036961	Potato	plastid	86.35	85.51
GSMUA_Achr6P16470_001	Banana	plastid	81.77	85.5
Solyc03g118340.2.1	Tomato	nucleus	86.35	85.42
KRH59753	Soybean	endoplasmic reticulum	85.7	85.42
KRH41069	Soybean	mitochondrion, plastid	85.26	84.98
PGSC0003DMT400054236	Potato	plastid	83.84	84.4
Bra022751.1-P	Field mustard	plastid	85.59	84.39
AT5G50920.1	Thale cress	plastid	85.59	84.39
TraesCS5B01G112500.1	Wheat	plastid	84.72	84.35
CDY45800	Canola	plastid	84.39	83.93
Bra018030.1-P	Field mustard	mitochondrion	81.11	83.67
CDX68504	Canola	mitochondrion	83.19	82.11
Bra029922.1-P	Field mustard	mitochondrion	83.08	82.0
CDX83052	Canola	mitochondrion	82.97	81.98
CDY05878	Canola	mitochondrion	83.19	81.76
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	86.57	80.84
AT3G48870.3	Thale cress	cytosol, plastid	81.66	78.57
TraesCS4B01G083000.1	Wheat	plastid	72.82	70.96
TraesCS4B01G082900.1	Wheat	mitochondrion	52.84	64.28
GSMUA_AchrUn_...	Banana	plastid	79.69	62.34
VIT_16s0100g00180.t01	Wine grape	cytosol	4.37	58.82
VIT_07s0005g05810.t01	Wine grape	cytosol	4.37	58.82
PGSC0003DMT400037525	Potato	plastid	15.94	57.48
TraesCS5B01G554000.1	Wheat	cytosol	28.82	45.91
TraesCS4B01G046000.1	Wheat	cytosol	31.99	44.19
TraesCS5B01G422900.1	Wheat	cytosol	29.91	44.05
TraesCS5B01G321800.1	Wheat	plastid	44.21	43.69
TraesCS7B01G357500.1	Wheat	cytosol	31.11	43.58
TraesCS5B01G422800.1	Wheat	cytosol	31.55	43.2
TraesCS5B01G537100.1	Wheat	mitochondrion	31.77	43.11
TraesCS2B01G307500.1	Wheat	plastid	44.32	43.01
TraesCS2B01G158300.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	32.31	42.9
TraesCS7B01G357600.2	Wheat	cytosol	31.55	42.88
TraesCS7B01G357400.1	Wheat	cytosol	30.13	41.38
TraesCS1B01G315600.1	Wheat	cytosol	32.86	41.01
TraesCS5B01G423000.1	Wheat	cytosol	30.57	40.64
TraesCS6B01G174500.1	Wheat	mitochondrion	43.67	40.36
TraesCS4B01G380800.1	Wheat	plastid	42.03	39.49
TraesCS4B01G393100.1	Wheat	cytosol	37.23	37.76
TraesCS3B01G308100.1	Wheat	cytosol	37.55	37.68
TraesCS1B01G352400.1	Wheat	cytosol, golgi	37.66	37.62
TraesCS5B01G070000.1	Wheat	mitochondrion	19.21	37.13
TraesCS4B01G090300.1	Wheat	mitochondrion	31.11	36.68
TraesCS6B01G278000.1	Wheat	cytosol	32.53	36.3

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382
SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	EnsemblPlantsGene:TraesCS6B01G233800	EnsemblPlants:TraesCS6B01G233800.1	InterPro:UVR_dom
TIGR:cd00009	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:391071459..391096188

Molecular Weight (calculated)

101507.0 Da

IEP (calculated)

6.016

GRAVY (calculated)

-0.306

Length

916 amino acids

Sequence
(BLAST)

001: MEGALFQSAI VPTVYNSCAQ VRGHARATSF RSMETQTITL GGFQGLRRAN FLDTKSVVRH DFGSIVASQL ARPRGKGSRM VVRAMFERFT EKAIKVIMLA
101: QEEARRLGHN FVGTEQILLG LIGEGTGIAA KVLKSMGINL KDARVEVEKI IGRGSGFVAV EIPFTPRAKR VLELSLEEAR QLGHNYIGSE HLLLGLLREG
201: EGVAARVLES LGADPNNIRA QVIRMVGEST EAVGAGAGGG SSGQKMPTLE EYGTNLTKLA EEGKLDPVVG RQDQIERVTQ ILGRRTKNNP CLIGEPGVGK
301: TAIAEGLAQR ITNGDVPETI EGKKVITLDM GLLVAGTKYR GEFEERLKKL MEEIKQSDDI ILFIDEVHTL IGAGAAEGAI DAANILKPAL ARGELQCIGA
401: TTLDEYRKHI EKDPALERRF QPVKVPEPTV DETIQILRGL RERYELHHKL QYTDDALVAA AKLSYQYISD RFLPDKAIDL IDEAGSRVRL RHAQLPDEAK
501: ELDKELRQVT KDKNEAVRGQ DFEKAGELRD REMELKAQIT AIIDKSKEMV KAESESGEVG PLVTEADIQH IVSSWTGIPV EKVSADESDR LLKMEETLHQ
601: RIIGQDEAVK AISRAIRRAR VGLKNPNRPI ASFIFSGPTG VGKSELAKAL ASYYFGSEEA MIRLDMSEFM ERHTVSKLIG SPPGYVGYTE GGQLTEAVRR
701: RPYTVVLFDE IEKAHPDVFN MMLQILEDGR LTDSKGRTVD FKNTLLIMTS NVGSSVIEKG GRKIGFDLDY DEKDTSYNRI KSLVTEELKQ YFRPEFLNRL
801: DEMIVFRQLT KLEVKEIADI MLKEVFDRLK VKEIDLQVTE RFRDRVVDDG YNPSYGARPL RRAIMRLLED SLAEKMLAGE VKEGDSAIVD VDSEGKVIVL
901: NGGSGVLEPL TPILST

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.