Factsheet for GSMUA_Achr6P16470_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	14.16	97.64
GSMUA_Achr6P08040_001	Banana	cytosol	67.35	91.61
GSMUA_Achr3P18630_001	Banana	plastid	90.18	87.49
CDX84888	Canola	cytosol	82.31	87.18
CDY64710	Canola	cytosol	80.48	85.77
KRH54115	Soybean	plastid	86.87	82.54
KRH63851	Soybean	plastid	86.76	82.43
Solyc12g042060.1.1	Tomato	plastid	86.53	82.12
PGSC0003DMT400037527	Potato	cytosol	86.53	82.12
HORVU2Hr1G071080.3	Barley	plastid	85.84	82.01
TraesCS6D01G183600.2	Wheat	cytosol, plastid	85.73	81.99
TraesCS6A01G195200.1	Wheat	plastid	85.73	81.99
Zm00001d003894_P004	Maize	plastid	86.19	81.98
EES12052	Sorghum	plastid	86.19	81.98
KRH59753	Soybean	endoplasmic reticulum	85.96	81.94
TraesCS2B01G304200.1	Wheat	golgi	85.73	81.9
TraesCS2D01G285800.1	Wheat	plastid	85.73	81.9
PGSC0003DMT400036961	Potato	plastid	86.42	81.84
GSMUA_Achr8P09160_001	Banana	plastid	86.3	81.82
TraesCS6B01G233800.1	Wheat	plastid	85.5	81.77
Zm00001d025273_P019	Maize	plastid	85.96	81.76
Solyc03g118340.2.1	Tomato	nucleus	86.42	81.75
TraesCS2A01G287300.2	Wheat	plastid	83.33	81.56
KRH41069	Soybean	mitochondrion, plastid	85.16	81.18
Bra018030.1-P	Field mustard	mitochondrion	82.08	80.97
PGSC0003DMT400054236	Potato	plastid	83.79	80.66
Os04t0397100-01	Rice	plastid	37.1	80.65
KXG23307	Sorghum	plastid	84.7	80.56
Zm00001d024009_P001	Maize	plastid	84.59	80.46
CDY45800	Canola	plastid	84.36	80.24
Os12t0230100-01	Rice	plastid	84.13	80.2
Bra022751.1-P	Field mustard	plastid	84.59	79.76
AT5G50920.1	Thale cress	plastid	84.59	79.76
TraesCS5D01G118700.1	Wheat	plastid	83.11	79.13
TraesCS5A01G118900.1	Wheat	unclear	83.11	79.13
TraesCS5B01G112500.1	Wheat	plastid	82.88	78.91
CDX68504	Canola	mitochondrion	82.88	78.23
Bra029922.1-P	Field mustard	mitochondrion	82.76	78.12
CDX83052	Canola	mitochondrion	82.65	78.1
CDY05878	Canola	mitochondrion	82.88	77.9
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	86.53	77.27
AT3G48870.3	Thale cress	cytosol, plastid	82.19	75.63
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	82.53	74.31
GSMUA_AchrUn_...	Banana	plastid	83.33	62.34
TraesCS4B01G082900.1	Wheat	mitochondrion	53.42	62.15
PGSC0003DMT400037525	Potato	plastid	17.58	60.63
VIT_07s0005g05810.t01	Wine grape	cytosol	4.57	58.82
VIT_16s0100g00180.t01	Wine grape	cytosol	4.57	58.82
GSMUA_Achr6P23780_001	Banana	cytosol	42.58	44.14
GSMUA_Achr9P22420_001	Banana	cytosol	42.01	41.68
GSMUA_Achr6P16670_001	Banana	plastid	43.49	40.66
GSMUA_Achr1P13710_001	Banana	cytosol	36.07	37.13
GSMUA_Achr3P16240_001	Banana	cytosol	35.96	36.97
GSMUA_Achr10P...	Banana	plastid	41.44	36.63
GSMUA_Achr2P12140_001	Banana	plastid	4.68	17.9

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G16470_001	EnsemblPlants:GSMUA_Achr6P16470_001	EnsemblPlants:GSMUA_Achr6T16470_001
InterPro:IPR001943	InterPro:IPR036628	UniProt:M0T7J5	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151
PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871
PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	UniParc:UPI000295C4B8	InterPro:UVR_dom	SEG:seg	:	:

Description

ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G16470_001]

Coordinates

chr6:+:10981235..10987921

Molecular Weight (calculated)

97303.9 Da

IEP (calculated)

7.479

GRAVY (calculated)

-0.282

Length

876 amino acids

Sequence
(BLAST)

001: MAGSLVQSAV LPAVIMNRSH SQLQGSGKAK RGARMICQLQ MHPLRLQGFA GLRVADNFRL VTKAMFERFT EKAIKVIMLA QEEARRLGHN FVGTEQILLG
101: LIGEGTGIAA KVLKSMGISL KDARVEVEKI IGRGSGFVAV EIPFTPRAKR VLELSLEEAR QLGHNYIGSE HLLLGLLHEG EGVAARVLES LGADPSNIRT
201: QANFCLVIRM VGESTEAVGA GVVGGSSGNK MPTLEEYGTN LTKLAEEGKL DPVVGRQEQI ERVTQILGRR TKNNPCLIGE PGVGKTAIAE GLAQRIANGD
301: VPETIEGKKV ITLDMGLLVA GTKYRGEFEE RLKKLMDEIK QSDDIILFID EVHTLIGAGA AEGAIDAANI LKPALARGEL QCVGATTLDE YRKHIEKDPA
401: LERRFQPVKV PEPTVDEAIQ ILRGLRERYE IHHKLCYTDE AIVAAAQLSF QYISDRFLPD KAIDLIDEAG SRVRLRHAKL PEDARELDRE LRQITKEKNE
501: AVRSQYFEKA GELRDREMEL KAQISALIDK GKERSKAESE AGVSGPVVTE ADIQHIVSSW TGIPVEKVST DESDRLLKME ETLHKRVIGQ DEAVKAISRA
601: IRRARVGLKN PNRPIASFIF SGPTGVGKSE LAKSLASYYF GSEEAMIRLD MSEFMERHTV SKLIGSPPGY VGYTEGGQLT ESVRRRPYTV VLFDEIEKAH
701: PDVFNMMLQI LEDGRLTDSK GRTVSFKSTL LIMTSNVGSS SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LEEVFDRLKG KDIKLQVTER
801: FKDRVVEEGY NPSYGARPLR RAIMRLLEDS LAEKMLAREI KEGDSAIFNL MDMGQTKCTR RSSTMHSAYL SAHLSK

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.