Factsheet for GSMUA_Achr8P09160_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	13.31	96.85
GSMUA_Achr6P08040_001	Banana	cytosol	64.07	91.93
CDX84888	Canola	cytosol	79.11	88.39
GSMUA_Achr3P18630_001	Banana	plastid	85.5	87.49
CDY64710	Canola	cytosol	77.49	87.1
GSMUA_Achr6P16470_001	Banana	plastid	81.82	86.3
KRH54115	Soybean	plastid	83.77	83.95
KRH63851	Soybean	plastid	83.66	83.84
Solyc12g042060.1.1	Tomato	plastid	83.44	83.53
PGSC0003DMT400037527	Potato	cytosol	83.44	83.53
Bra018030.1-P	Field mustard	mitochondrion	79.55	82.77
KRH59753	Soybean	endoplasmic reticulum	82.25	82.7
PGSC0003DMT400036961	Potato	plastid	82.47	82.38
AT5G50920.1	Thale cress	plastid	82.68	82.24
CDY45800	Canola	plastid	81.93	82.19
Solyc03g118340.2.1	Tomato	nucleus	82.36	82.18
KRH41069	Soybean	mitochondrion, plastid	81.71	82.15
Bra022751.1-P	Field mustard	plastid	82.03	81.59
PGSC0003DMT400054236	Potato	plastid	79.76	80.99
CDY05878	Canola	mitochondrion	81.28	80.58
CDX68504	Canola	mitochondrion	80.84	80.5
Bra029922.1-P	Field mustard	mitochondrion	80.74	80.39
CDX83052	Canola	mitochondrion	80.52	80.26
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	84.2	79.31
AT3G48870.3	Thale cress	cytosol, plastid	79.55	77.21
GSMUA_AchrUn_...	Banana	plastid	79.22	62.51
PGSC0003DMT400037525	Potato	plastid	16.99	61.81
VIT_07s0005g05810.t01	Wine grape	cytosol	4.44	60.29
VIT_16s0100g00180.t01	Wine grape	cytosol	4.44	60.29
GSMUA_Achr6P23780_001	Banana	cytosol	40.26	44.02
GSMUA_Achr9P22420_001	Banana	cytosol	40.26	42.13
GSMUA_Achr6P16670_001	Banana	plastid	41.45	40.88
GSMUA_Achr3P16240_001	Banana	cytosol	35.28	38.26
GSMUA_Achr1P13710_001	Banana	cytosol	35.06	38.07
GSMUA_Achr10P...	Banana	plastid	39.72	37.03
GSMUA_Achr2P12140_001	Banana	plastid	4.33	17.47

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G09160_001	EnsemblPlants:GSMUA_Achr8P09160_001	EnsemblPlants:GSMUA_Achr8T09160_001
InterPro:IPR001943	InterPro:IPR036628	UniProt:M0TNW9	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151
PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871
PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	UniParc:UPI000296B5B9	InterPro:UVR_dom	SEG:seg	:	:

Description

ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G09160_001]

Coordinates

chr8:+:6279018..6292066

Molecular Weight (calculated)

102240.0 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.351

Length

924 amino acids

Sequence
(BLAST)

001: MARPLFKSSV LPDAVSGSVP LFQGSGKARK PANMMCSRRS SQLRFLGFTG LKGSNDLHLV SGPSKDFRLA VSASVSAPKG KASRGVAVAM FERFTEKAIK
101: VIMLAQEEAR RLGHNFVGTE QILLGLIGEG TGIAAKVLKS MGINLKDARI EVEKIIGRGS GFVAVEIPFT PRAKRVLELS LEEARQLGHN YIGSEHLLLG
201: LLREGEGVAA RVLENLGADT SNIRTQVIRM VGESTEAVGA GVGGGSSGNK MPTLDEYGTN LTKLAEEGKL DPVVGRQQQI ERVVQILGRR TKNNPCLIGE
301: PGVGKTAIAE GLAQRIVTGD VPETIEGKKV ITLDMGLLVA GTKYRGEFEE RIKKLMEEIK QSDEIILFID EVHTLIGAGA AEGAIDAANI LKPALARGEL
401: QCIGATTLDE YRKHIEKDPA LERRFQPVKV PEPTVDETIE ILRGLRERYE IHHKLRYTDE ALIAAAHLSY QYISDRFLPD KAIDLVDEAG SRVRLRHAQL
501: PEDARELDKE LRRITKEKNE AVRGQDFEKA GELRDREMEL KAQISALVDK GKERSQAESE AGEGGPVVTE ADIQHIVSSW TGIPVEKVSS DESDRLLKME
601: ETLHKRVIGQ DEAVKAISRA IRRARVGLKN PNRPIASFIF SGPTGVGKSE LAKALAAYYF GSEEAMIRLD MSEFMERHTV SKLIGSPPGY VGYTEGGQLT
701: EAVRRRPYTV VLYDEIEKAH PDVFNMMLQI LEDGRLTDSK GRTVDFKNTL LIMTSNVGSS SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVREIADIM
801: LKEVFERVKA KDIELQVTER FRDRVVEEGY SPSYGARPLR RAIMRLLEDS MAEKMLAGEI KEGDSAIVDC SATLTKPPYN REREREREGG NTNNTSKESR
901: SVVASLSSSY LYECNKALHQ TTIT

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.