Factsheet for Os03t0426900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20141629

plastid: 27992503

gfp PMID: 20141629 doi

A Singh, U Singh, D Mittal, A Grover

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0181300-01
Os06t0649000-01
Os09t0417600-02
Os09t0417800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	Os02t0181300-01	AT2G25000.1	21798944
AT5G15450.1	Os06t0649000-01	AT2G25000.1	21798944
AT5G15450.1	Os09t0417600-02	AT2G25000.1	21798944
AT5G15450.1	Os09t0417800-01	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047302_P002	Maize	plastid	91.82	92.2
TraesCSU01G131300.1	Wheat	plastid	91.0	91.66
Zm00001d029557_P001	Maize	plastid	91.62	91.62
EER94678	Sorghum	plastid	92.02	91.56
TraesCS4B01G380800.1	Wheat	plastid	91.0	91.28
TraesCS5A01G547300.1	Wheat	golgi, plastid	90.8	91.17
HORVU4Hr1G090440.2	Barley	plastid	90.29	83.46
Bra023518.1-P	Field mustard	plastid	79.45	80.69
GSMUA_Achr6P16670_001	Banana	plastid	77.2	80.58
VIT_14s0108g01500.t01	Wine grape	plastid	80.27	80.43
AT5G15450.1	Thale cress	plastid	79.24	80.06
CDX90991	Canola	plastid	78.83	79.98
CDX85551	Canola	plastid	53.48	79.97
KRH18417	Soybean	nucleus	79.55	79.55
KRH01254	Soybean	nucleus, plastid	79.14	79.47
KRH44979	Soybean	nucleus, plastid	79.14	79.47
KRG93616	Soybean	nucleus	79.45	79.45
Bra008698.1-P	Field mustard	plastid	78.83	79.24
CDY26423	Canola	plastid	78.83	79.24
CDX69524	Canola	plastid	78.83	79.24
CDX85552	Canola	cytosol	20.65	79.22
PGSC0003DMT400003652	Potato	cytosol, plastid	78.43	78.35
Solyc02g088610.2.1	Tomato	plastid	78.32	78.16
Os02t0181900-01	Rice	mitochondrion	65.44	65.11
Os05t0519700-01	Rice	nucleus	45.19	48.46
Os04t0397100-01	Rice	plastid	19.33	46.9
Os11t0269000-00	Rice	cytosol, plasma membrane	18.0	44.67
Os02t0297132-00	Rice	cytosol	16.56	42.97
Os02t0537400-01	Rice	cytosol	19.22	42.92
Os12t0230100-01	Rice	plastid	39.98	42.55
Os11t0267400-01	Rice	plasma membrane	38.96	40.88
Os02t0526400-01	Rice	cytosol, plasma membrane	34.36	40.88

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	EntrezGene:4333161	InterPro:AAA+_ATPase
ProteinID:AAR01771.1	ProteinID:AAS07199.1	ProteinID:ABF96723.1	EMBL:AK069123	InterPro:ATPase_AAA_core	ProteinID:BAF12324.1
ProteinID:BAS84787.1	InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536
GO:GO:0009570	GO:GO:0009628	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0042026	InterPro:IPR036628	EnsemblPlantsGene:Os03g0426900	EnsemblPlants:Os03t0426900-01	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871
PANTHER:PTHR11638	PANTHER:PTHR11638:SF144	UniProt:Q75GT3	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	TIGRFAMs:TIGR03346	UniParc:UPI0000239547	RefSeq:XP_015630429.1	SEG:seg	:

Description

CLASS I CLP ATPASE B-CSimilar to Heat shock protein 101. (Os03t0426900-01);Similar to APG6/CLPB-P/CLPB3 (ALBINO AND PALE GREEN 6); ATP binding / ATPase. (Os03t0426900-02)

Coordinates

chr3:+:17832202..17839049

Molecular Weight (calculated)

108992.0 Da

IEP (calculated)

6.563

GRAVY (calculated)

-0.410

Length

978 amino acids

Sequence
(BLAST)

001: MAAAPPLAAG LRPAMAAAQA PVVAAAWGVG ARRGAALSSS ARCRALRLSR GGGGGRDGWV PPPVVGRMPP RTLSVRCAAS NGRITQQEFT EMAWQSIVSS
101: PEVAKESKHQ IVETEHLMKS LLEQRNGLAR RIFSKAGVDN TRLLDATEKF IQRQPKVLGE DPGSMLGRDL EALIQRARDF KKEYGDSFVS VEHLVLGFAE
201: DKRFGRQLFK DFQITVQSLK TAIESIRGKQ NVIDQDPEGK YEALDKYGKD LTAMARQGKL DPVIGRDDEI RRCIQILSRR TKNNPVLIGE PGVGKTAIAE
301: GLAQRIVQGD VPQALTNRRL IALDMGALIA GAKYRGEFED RLKAVLKEVT DSDGQTILFI DEIHTVVGAG ATNGAMDAGN LLKPMLGRGE LRCIGATTLD
401: EYRKYIEKDP ALERRFQQVY VDQPSVEDTI SILRGLRERY ELHHGVRISD SALVAAALLS DRYISGRFLP DKAIDLVDES AAKLKMEITS KPTALDEIDR
501: AVIKLEMERL SLTNDTDKAS RDRLSRIEAE LSLLKEKQKD LTEQWEREKS VMTKIQSIKE EIDRVNVEIQ QAEREYDLNR AAELKYGSLN ALQRQLQTTE
601: KELDEYQSSG KSMLREEVTQ DDIAEIVSRW TGIPVSKLKQ SDREKLLYLE EELHKRVVGQ DPAVKAVSEA IQRSRAGLSD PNRPIASFMF MGPTGVGKTE
701: LAKALAAFMF NTEEAVVRID MSEYMEKHSV SRLIGAPPGY VGYEEGGQLT EAVRRRPYSI ILFDEIEKAH GDVFNVFLQI LDDGRVTDSQ GRKVSFTNSI
801: IIMTSNVGSQ FILNMDEEGG STDSAYENIK KRVMDAARSV FRPEFMNRID EYIVFKPLER EQINSIVKLQ LARVQKRIAD RKIKLEVSPG AVEFLGSLGY
901: DPNYGARPVK RVIQQYVENE LAKGILRGDF KDEDSILVDT QVTVPSNGQL PQQKLVFHKM SEESAPAAAE DEKFLPAV

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.