Factsheet for TraesCS4D01G047000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G267200.1	Wheat	cytosol, plastid	94.3	93.74
TraesCS4D01G046000.1	Wheat	cytosol	90.85	91.4
TraesCS3D01G090400.1	Wheat	mitochondrion	62.67	70.37
TraesCS5D01G429400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	70.02	70.02
TraesCS2D01G136900.1	Wheat	cytosol	54.57	69.73
TraesCS5D01G429500.1	Wheat	cytosol	69.87	69.66
TraesCS7D01G445400.1	Wheat	cytosol	59.22	69.54
Os02t0537400-01	Rice	cytosol	43.93	66.89
TraesCS7D01G445500.1	Wheat	cytosol	35.98	66.85
TraesCS5D01G429600.1	Wheat	mitochondrion	68.22	66.13
TraesCS5D01G429700.1	Wheat	endoplasmic reticulum, mitochondrion, plastid	67.77	65.7
TraesCS5D01G074000.1	Wheat	mitochondrion	68.07	65.51
TraesCS7D01G045400.1	Wheat	cytosol	45.88	62.07
TraesCS7D01G045500.1	Wheat	endoplasmic reticulum	56.97	61.09
TraesCS7D01G045700.1	Wheat	endoplasmic reticulum	56.97	61.09
TraesCS7D01G046200.1	Wheat	cytosol	47.53	60.73
TraesCS7D01G042900.1	Wheat	cytosol	58.17	60.34
TraesCS7D01G042800.1	Wheat	plastid	58.17	60.34
TraesCS7D01G045200.1	Wheat	extracellular, mitochondrion	47.53	60.27
OQU85081	Sorghum	mitochondrion, plastid	64.02	59.47
TraesCS5D01G254700.2	Wheat	mitochondrion	37.63	59.2
TraesCS3D01G449000.1	Wheat	cytosol	24.59	58.99
OQU81585	Sorghum	cytosol	55.77	57.59
KRH63249	Soybean	mitochondrion	16.34	56.19
TraesCS3D01G273600.1	Wheat	cytosol	56.07	40.96
TraesCS1D01G342100.1	Wheat	golgi	55.02	39.98
TraesCS6D01G183600.2	Wheat	cytosol, plastid	44.38	32.31
TraesCS5D01G118700.1	Wheat	plastid	44.53	32.28
TraesCS2D01G285800.1	Wheat	plastid	44.38	32.28
TraesCS4D01G081100.1	Wheat	plastid	43.33	30.74
TraesCS6D01G135600.1	Wheat	golgi	45.43	30.58
TraesCS2D01G289100.1	Wheat	plastid	41.98	29.6
TraesCS5D01G328100.1	Wheat	plastid	40.93	29.35

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:ClpA/B
InterPro:ClpA/B_CS1	InterPro:Clp_ATPase_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
PANTHER:PTHR11638	PANTHER:PTHR11638:SF100	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4D01G047000
EnsemblPlants:TraesCS4D01G047000.1	TIGR:cd00009	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:+:22572423..22575220

Molecular Weight (calculated)

73522.2 Da

IEP (calculated)

9.006

GRAVY (calculated)

-0.164

Length

667 amino acids

Sequence
(BLAST)

001: MHFDRVMVEP RVYDRLGASV PRSGGHVSSD TKAVLCLGAA AAVGWAAWRY YQRRACLRKF GRDMTALAGK TDPVIGRDDE IDRVVSILCR RTKNCVALVG
101: AAGVGKTAVA EALAQRIAAG MVPDVLAGAR VIELDVGALV AGTKWRGSFE RRMKDVIKQV EAADGKVILF IDEMHMLLGA GRSRRSAMDA ANMLKPALAR
201: GRIRCVGATT FDEYRKYIEK DAALERRFQK VQVEEPSMDT TIEILQALKK RHEHHHGLEI QDAALVAAAQ LAGRYITGRQ FPDKAIDLID EACATASKKM
301: RQINRKKAEV NTTKSSSAKA MKEAIIIPDD VAQVVSRWTG IPVTALNQEE KDKLICLADR LHQRVVGQDE AVNLVADAVL RSRVGLDHPG QPIGSFLFLG
401: STGVGKTELA KALAEQLFDS EKMLVRFDMS EYVGSSSVLR LVGAPPSYRG HEDGGQLTEK VRRNPYSVIL FDEVEKADPS VFNIFLQILD DSRLTDGRGQ
501: TVDFKNTIII MTSNLGSDYL ISKTARENTT ISTQELLMEQ VCKHFKLELL NRLSEIVIFE PLSHDKLKEI MKIQMKSIMA RVATKGISLS VSDAALDTIL
601: SESYTPTYGA RPIRRWMQKN VMTTLSKMLV KGEAGEGSTI CIEATDDNKG LKYEVVKEVS LHQCGLS

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.