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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, nucleus, peroxisome, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01496
EES03354
EES05697
EES06576
EES10997
EES11332
EES11334
EES19575
KXG22060
KXG22062
KXG22064
KXG24673
KXG26473
KXG27004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G46240.1 EES03354 AT2G26650.1 15299147
AT5G46240.1 EES19575 AT4G22200.1 12034902
AT5G46240.1 KXG22060 AT4G22200.1 12034902
AT5G46240.1 KXG22062 AT4G22200.1 12034902
AT5G46240.1 KXG22064 AT4G22200.1 12034902
AT5G46240.1 EES19575 AT4G22200.1 15299147
AT5G46240.1 KXG22060 AT4G22200.1 15299147
AT5G46240.1 KXG22062 AT4G22200.1 15299147
AT5G46240.1 KXG22064 AT4G22200.1 15299147
AT5G46240.1 EES19575 AT4G22200.1 17085433
AT5G46240.1 KXG22060 AT4G22200.1 17085433
AT5G46240.1 KXG22062 AT4G22200.1 17085433
AT5G46240.1 KXG22064 AT4G22200.1 17085433
AT5G46240.1 EES05697 AT5G41160.1 15299147
AT5G46240.1 EES10997 AT5G41160.1 15299147
AT5G46240.1 EES11332 AT5G41160.1 15299147
AT5G46240.1 EES11334 AT5G41160.1 15299147
AT5G46240.1 KXG24673 AT5G41160.1 15299147
AT5G46240.1 KXG26473 AT5G41160.1 15299147
AT5G46240.1 KXG27004 AT5G41160.1 15299147
AT5G46240.1 EES01496 AT5G46240.1 11042178
AT5G46240.1 EES06576 AT5G46240.1 11042178
AT5G46240.1 EES01496 AT5G46240.1 15299147
AT5G46240.1 EES06576 AT5G46240.1 15299147
AT5G46240.1 EES01496 AT5G46240.1 17085433
AT5G46240.1 EES06576 AT5G46240.1 17085433
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d016160_P001 Maize plasma membrane 87.93 92.1
Zm00001d053446_P001 Maize plastid 89.57 86.15
Os02t0245800-01 Rice plasma membrane 76.68 77.86
TraesCS6B01G190900.1 Wheat plasma membrane 76.41 76.83
TraesCS6D01G152200.1 Wheat plasma membrane 75.99 76.31
TraesCS6A01G160500.1 Wheat plasma membrane 75.86 76.17
GSMUA_Achr10P... Banana plasma membrane 56.24 62.4
GSMUA_Achr7P09360_001 Banana plasma membrane 53.77 60.31
EES01496 Sorghum mitochondrion, plasma membrane 43.62 60.0
CDY03233 Canola plasma membrane 51.3 57.01
GSMUA_Achr6P05630_001 Banana cytosol, nucleus, plasma membrane 53.09 56.83
Bra017567.1-P Field mustard plasma membrane 51.03 56.62
CDY35154 Canola plasma membrane 51.03 56.62
AT5G46240.1 Thale cress plasma membrane 50.62 54.51
CDX99479 Canola plasma membrane 50.48 53.72
CDX78839 Canola plasma membrane 50.34 53.66
CDY33464 Canola cytosol, plasma membrane, plastid 48.97 53.6
CDY62359 Canola cytosol, plasma membrane, plastid 48.83 53.45
Bra025028.1-P Field mustard cytosol, endoplasmic reticulum, plasma membrane 48.83 53.45
Bra013296.1-P Field mustard plasma membrane 50.21 53.28
Solyc02g070530.2.1 Tomato nucleus 49.25 52.18
AT4G18290.2 Thale cress mitochondrion, plasma membrane 50.62 52.12
PGSC0003DMT400054339 Potato plasma membrane 48.56 51.45
KRH44805 Soybean plasma membrane 50.89 50.96
VIT_10s0003g03270.t01 Wine grape plasma membrane 54.46 50.19
KRH21063 Soybean plasma membrane 52.95 49.68
Solyc08g016500.2.1 Tomato cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 46.36 49.49
PGSC0003DMT400024968 Potato cytosol, plasma membrane, vacuole 46.5 49.2
KRH11194 Soybean plasma membrane 51.85 48.65
CDX76529 Canola plasma membrane 47.05 48.17
Bra021012.1-P Field mustard plasma membrane 46.91 48.03
CDY34066 Canola endoplasmic reticulum, plasma membrane 35.12 42.31
KRH58233 Soybean cytosol, extracellular, plasma membrane 12.76 41.89
OQU87429 Sorghum mitochondrion 34.02 39.68
Solyc03g058900.1.1 Tomato cytosol 10.01 37.44
EES07044 Sorghum cytosol, mitochondrion, peroxisome, plasma membrane 30.59 37.1
EES03354 Sorghum plastid 44.03 36.27
KXG22062 Sorghum plastid 7.68 35.22
EES19575 Sorghum plastid 39.92 34.77
KXG22064 Sorghum plastid 39.37 34.09
KXG22060 Sorghum cytosol, endoplasmic reticulum, plasma membrane 32.37 33.96
PGSC0003DMT400054318 Potato nucleus 14.27 33.02
EER95927 Sorghum plastid 39.51 31.34
PGSC0003DMT400024866 Potato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 11.93 30.1
EES10868 Sorghum cytosol 24.42 24.55
KXG19708 Sorghum cytosol 27.71 23.65
Protein Annotations
Gene3D:1.10.287.70Gene3D:2.60.120.10MapMan:24.3.2.2EntrezGene:8085586UniProt:C5XZ04EnsemblPlants:EES06576
ProteinID:EES06576ProteinID:EES06576.1GO:GO:0003674GO:GO:0005215GO:GO:0005216GO:GO:0005249
GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0005887GO:GO:0006810GO:GO:0006811
GO:GO:0006813GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0034220
GO:GO:0042391GO:GO:0055085GO:GO:0071805InterPro:IPR000595InterPro:IPR014710InterPro:IPR021789
InterPro:Ion_trans_domInterPro:KHA_domInterPro:K_chnl_volt-dep_EAG/ELK/ERGPFAM:PF00027PFAM:PF00520PFAM:PF11834
PRINTS:PR01463PFscan:PS50042PFscan:PS51490PANTHER:PTHR10217PANTHER:PTHR10217:SF551InterPro:RmlC-like_jellyroll
SMART:SM00100EnsemblPlantsGene:SORBI_3004G107500SUPFAM:SSF51206SUPFAM:SSF81324TMHMM:TMhelixUniParc:UPI0001A85E25
RefSeq:XP_002453600.1InterPro:cNMP-bd-likeInterPro:cNMP-bd_dom:::
Description
hypothetical protein
Coordinates
chr4:-:10294664..10298446
Molecular Weight (calculated)
83539.3 Da
IEP (calculated)
6.760
GRAVY (calculated)
-0.190
Length
729 amino acids
Sequence
(BLAST)
001: MTQAHSKSCF QQFSDGVQVK RNSGSFTIEL LPSLGATINQ SNKLQKFIIS PYDPRYRYWE LFLIVLVIYS AWICPFELAF LRDLSSKLLL VENIVNSFFA
101: IDIVLTFFVA YVDSKTHLLV DDRKRIAVRY LSTWFIFDVC STAPFQPISL LFTHKGNDLA FKILNMLRLW RLHRVSSLFA RLEKDIRFNY FWTRCSKLIS
201: VTLFAVHCAG CFNYMIADRY PDPERTWIGA VMPTFRSESL WTRYVTALYW SITTLTTTGY GDLHAENPRE MLFDICYMLF NLGLTAYLIG NMTNLVVHGT
301: SRTQNFRDSI QSASEFAARN QLPEKIKQQM LSHFCLQFKT EGLNQQAMLN CLPKGIRSSI AYNLFFTILQ QAYLFHGVSN NFIAELVMDV QAEYFPPKED
401: IMLQNEGAAD IYVIVSGVVN LITTINGNEQ VYEKVEEGDM FGEVGALCDI PQPFTCRTTT LSQLLRIRKI RLTEIMQEHR EDSNILMNNL FQKLKLQENL
501: PELNQLDRRF MHKYELFHAP REAWLLPQPY LQYTEHKFED ISKKVPTFGG DHGPTKLAAE TIQLRMPQQG NSHDHGNFGA TDGMAGGEDK CNEVHINCET
601: KKGTKEFCVQ IKSEDCDAAS YWQTSHETVK LGSSHNTLDG ITTRENQDSG NIQSSNKRVT IHAYPHNATG SLVQNGKLIN LPGSLEEIFE IGSQKFPGFH
701: PTKLVSRDYA EIDDISVIRD GDHLFLLQM
Best Arabidopsis Sequence Match ( AT4G18290.2 )
(BLAST)
001: MLKRKHLNTR PMSISCTRNF FKRFCVEEYN MDTFKHSSFL SADLLPSLGA RINQSTKLRK HIISPFDPRF RGWEMWLVIL VIYSAWICPF EFAFITYKKD
101: ALFIIDNIVN GFFAIDIILT FFVAYLDSHS YLLVDKPKKI AIRYLSTWFA FDVCSTAPFQ SLSLLFKYNG SEIGFRVLSM LRLWRLRRVS SLFARLEKDI
201: RFNYFWTRCT KLISVTLFAV HCAGCFAYLI ADQYHDPTKT WIGAVYPNFK ETSVWSRYVT ALYWSITTLT TTGYGDLHAE NPREMLFFVF FMLFNLGFTS
301: YLIGNMTNLV VHWTSRTRNF RDTVRAASEF ASRNQLPPNI QDQMLSHICL KFKTEGLKQQ EALNGLPKAI RSSIANYLFF PIVQNVYLFH GVSRNFLFQL
401: VSDIDAEYFP PREDVILQNE APTDLYILVS GAVDFTVYVG EEDQVQGKAV VGDAFGEIGV LCYTPQPFTV RTTELSQILR ISKKSLMSAM RAHVEDGRVI
501: MNNLFMKLRG QQSIAIDDPN SEPESLLKEW LVGGSKTGEG NASDQGHGHK YLQLHDSENI DMGSTEWRDS RRSGYGETKR VREHTIEIEE GEKPNKEFDG
601: KGCSDADLTS FEFHSQEAYP YCRSNIQIKQ HEAAKPKDKR VTIHLKSRDK DLSKLIILPA SIEELLRLAG EKFGYSFTKV TNAENAEIDD EDVIRDGDHL
701: YILINENS
Arabidopsis Description
KAT2potassium channel in Arabidopsis thaliana 2 [Source:TAIR;Acc:AT4G18290]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.