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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, peroxisome, vacuole

Predictor Summary:
  • nucleus 1
  • golgi 2
  • extracellular 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, peroxisome, vacuole
Any Predictor:golgi, nucleus, peroxisome, vacuole
BaCelLo:nucleus
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:vacuole
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01496
EES06576

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G41160.1 EES01496 AT5G46240.1 15299147
AT5G41160.1 EES06576 AT5G46240.1 15299147
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G452200.1 Wheat plasma membrane 71.07 73.49
TraesCS2A01G452400.1 Wheat plasma membrane 71.07 73.3
HORVU2Hr1G105340.1 Barley golgi, peroxisome, plasma membrane 72.33 72.89
TraesCS2D01G452300.1 Wheat peroxisome 70.81 72.85
TraesCS2B01G473900.1 Wheat plasma membrane 70.3 72.7
TraesCS2A01G452500.1 Wheat peroxisome 70.05 71.32
HORVU2Hr1G105240.3 Barley peroxisome 71.83 68.69
HORVU2Hr1G105360.5 Barley peroxisome 71.07 67.96
TraesCS2B01G474000.1 Wheat cytosol, peroxisome, plasma membrane 72.33 63.76
Zm00001d026042_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 93.4 54.68
CDY12545 Canola plasma membrane 38.32 50.67
KRH40250 Soybean endoplasmic reticulum, plasma membrane, vacuole 45.69 49.72
EES11334 Sorghum peroxisome 46.7 48.29
CDY36342 Canola endoplasmic reticulum, plasma membrane, vacuole 36.29 47.83
KRH00977 Soybean endoplasmic reticulum, plasma membrane, vacuole 43.4 46.85
Solyc01g088550.2.1 Tomato plasma membrane 43.15 46.7
AT1G44750.1 Thale cress plasma membrane 44.16 45.91
PGSC0003DMT400004320 Potato plasma membrane 42.89 45.8
KXG26473 Sorghum cytosol, peroxisome, plasma membrane 44.16 44.62
EES11332 Sorghum peroxisome 41.62 43.85
KXG24673 Sorghum peroxisome 44.92 43.17
VIT_15s0021g00650.t01 Wine grape plastid 40.86 42.37
CDY14989 Canola plasma membrane 44.42 42.17
Bra036955.1-P Field mustard plasma membrane 44.42 42.17
CDX71327 Canola plasma membrane 44.16 41.83
EES10997 Sorghum plasma membrane 44.16 41.73
VIT_19s0014g00150.t01 Wine grape plasma membrane 40.1 41.69
KRH13483 Soybean plasma membrane 32.23 41.37
Bra037874.1-P Field mustard plasma membrane 34.52 40.72
AT4G08700.1 Thale cress plasma membrane 37.06 40.44
AT5G41160.1 Thale cress plasma membrane 36.04 39.01
KRH21843 Soybean mitochondrion 40.36 37.86
EES05697 Sorghum plastid 45.94 36.13
CDY54350 Canola plasma membrane 29.7 35.24
CDX75141 Canola plasma membrane 28.93 34.34
OQU93095 Sorghum plasma membrane 27.66 28.84
EER99040 Sorghum plasma membrane 26.14 27.18
KXG35809 Sorghum plasma membrane 25.89 26.22
EER99038 Sorghum plasma membrane 19.29 26.12
OQU89926 Sorghum mitochondrion, plasma membrane 26.4 25.68
EES18657 Sorghum mitochondrion 21.32 24.35
EES01264 Sorghum plasma membrane 23.86 24.29
OQU78406 Sorghum plastid 22.08 23.58
Protein Annotations
MapMan:24.2.1.6UniProt:A0A1B6PMV1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021EnsemblPlants:KXG27004ProteinID:KXG27004ProteinID:KXG27004.1
ProteinID:OQU82220.1PFAM:PF16913PANTHER:PTHR31376PANTHER:PTHR31376:SF33InterPro:PUP_plantEnsemblPlantsGene:SORBI_3006G195100
SUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI00081AC491SEG:seg::
Description
hypothetical protein
Coordinates
chr6:+:54802712..54804881
Molecular Weight (calculated)
42345.6 Da
IEP (calculated)
6.513
GRAVY (calculated)
0.401
Length
394 amino acids
Sequence
(BLAST)
001: MGDVGEIQLQ IAGIRGQEAG GDDHGQRAEN GGACRATEAP RPPLSKRLAW WAVVLINIVF ILGGQSVATL LGRIYYDQGG NSLWMQTVVQ SCGTPLAIPL
101: LLYFRFRTTP SSSSVAANRP PLVKIAAIYA GLGVLLAGDN LMYSYGLLYL PMSTYSIICA SQVSFNAVFA YFLNKEKFRA LVLNSVVLLT FSAALVGVNN
201: GSDETDSSIP KGKFPAGFAL TLSASALFSL ILSLTQLTFD EVLKSDTLHT VLEMQFWSNT AAACVSVAGL FASGEWRTIA GEMEAYKKGE LAYAMTLAWT
301: AVSWQLCTMG LMGLVAAVSS LFTNIISTVG MPLSPVIAVI FLGDRMDGVK LMAMLIGVWG LLSYVYQHYL DDRAAKKIAE KSEEQHQAAK ISAE
Best Arabidopsis Sequence Match ( AT1G44750.1 )
(BLAST)
001: MAKEPVRVLV TGAAGNQEPI LVKEESVVGI PTPLLKLKSW QWWVLVSVNI FFLIGGQAAS VLLGRFYYDE GGNSKWMATL VQTAAFPILY IPLLLLPSSA
101: SVESSESSCS LKYIVLIYVL LGVIIAGDNM LYSVGLLYLS ASTYSLICAT QLAFNAVFSY FINAQKFTAL ILNSVVLLSF SAALIALNDD ADTPSGVSRS
201: KYIVGFVCTL AASALYSLLL SLMQFSFEKI LKRETFSVVL EMQIYTSLVA TCVSVIGLFA SGEWRTLHGE MEGYHKGQAS YVLTLVWTAV TWQVCSVGVV
301: GLIFLVTSLF SNVISTLSLA VTPLAALVVF RDKMSGVKIM AMLIAIWGFA SYVYQNHIDD LKVRQARQQA QAGRVEPPC
Arabidopsis Description
PUP11Probable purine permease 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPF6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.