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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY03233
CDY33464
CDY35154
CDY62359

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G41160.1 CDY03233 AT5G46240.1 15299147
AT5G41160.1 CDY33464 AT5G46240.1 15299147
AT5G41160.1 CDY35154 AT5G46240.1 15299147
AT5G41160.1 CDY62359 AT5G46240.1 15299147
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY54350 Canola plasma membrane 96.69 96.69
Bra037874.1-P Field mustard plasma membrane 86.14 85.63
AT4G08700.1 Thale cress plasma membrane 71.39 65.65
AT5G41160.1 Thale cress plasma membrane 68.07 62.09
CDY12545 Canola plasma membrane 46.69 52.01
CDY36342 Canola endoplasmic reticulum, plasma membrane, vacuole 45.18 50.17
KRH40250 Soybean endoplasmic reticulum, plasma membrane, vacuole 50.9 46.69
KRH00977 Soybean endoplasmic reticulum, plasma membrane, vacuole 51.2 46.58
CDY14989 Canola plasma membrane 57.23 45.78
GSMUA_Achr5P12690_001 Banana plasma membrane 47.89 45.56
CDX71327 Canola plasma membrane 56.93 45.43
VIT_15s0021g00650.t01 Wine grape plastid 50.0 43.68
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, vacuole 37.05 40.73
Zm00001d051504_P001 Maize golgi, peroxisome, plasma membrane 46.69 40.36
Solyc01g088550.2.1 Tomato plasma membrane 43.98 40.11
PGSC0003DMT400004320 Potato plasma membrane 43.98 39.57
Os02t0689200-03 Rice plasma membrane 45.78 39.48
TraesCS6B01G289900.1 Wheat peroxisome 45.18 38.56
Zm00001d002515_P001 Maize peroxisome 43.07 38.44
TraesCS6A01G262900.1 Wheat plasma membrane 44.88 38.21
HORVU2Hr1G105300.1 Barley peroxisome 42.77 37.97
TraesCS6D01G243400.1 Wheat golgi, peroxisome, plasma membrane 44.58 37.95
EES11332 Sorghum peroxisome 42.47 37.7
TraesCS2B01G474100.1 Wheat peroxisome 41.87 37.17
TraesCS2D01G452400.1 Wheat peroxisome 41.87 37.17
TraesCS5A01G413800.1 Wheat peroxisome 41.57 36.9
TraesCS2A01G452600.1 Wheat peroxisome 40.66 36.1
HORVU6Hr1G066740.2 Barley golgi, mitochondrion 45.18 35.89
Zm00001d003417_P001 Maize endoplasmic reticulum, extracellular, vacuole 32.53 34.5
TraesCS2B01G473800.1 Wheat endoplasmic reticulum, extracellular, vacuole 34.94 33.62
CDX90414 Canola plasma membrane 37.95 33.6
CDY01525 Canola plasma membrane 37.95 33.33
EES11334 Sorghum peroxisome 38.25 33.33
Os09t0548600-00 Rice endoplasmic reticulum, extracellular, vacuole 34.64 33.24
CDX76538 Canola plasma membrane 38.86 32.91
CDX99493 Canola plasma membrane 38.25 32.4
CDX76537 Canola plasma membrane 37.65 32.05
CDY08897 Canola plasma membrane 37.65 31.97
CDX78835 Canola plasma membrane 37.35 31.71
Zm00001d002514_P001 Maize endoplasmic reticulum, peroxisome, plasma membrane 36.45 31.68
CDY08899 Canola cytosol, peroxisome, plasma membrane 37.05 31.54
TraesCS2B01G473900.1 Wheat plasma membrane 35.54 30.97
CDY08895 Canola plasma membrane 36.75 30.89
CDX76540 Canola plasma membrane 36.75 30.73
KXG24673 Sorghum peroxisome 37.65 30.49
TraesCS2D01G452200.1 Wheat plasma membrane 34.94 30.45
TraesCS2A01G452400.1 Wheat plasma membrane 34.94 30.37
TraesCS2D01G452100.1 Wheat plasma membrane 35.84 30.36
EES05697 Sorghum plastid 45.78 30.34
KXG26473 Sorghum cytosol, peroxisome, plasma membrane 35.54 30.26
TraesCS2D01G452300.1 Wheat peroxisome 34.64 30.03
CDY08900 Canola plasma membrane 28.01 29.9
TraesCS2A01G452500.1 Wheat peroxisome 34.34 29.46
HORVU2Hr1G105340.1 Barley golgi, peroxisome, plasma membrane 34.34 29.16
KXG27004 Sorghum golgi, peroxisome, vacuole 34.34 28.93
CDX76536 Canola plasma membrane 25.3 28.67
HORVU2Hr1G105360.5 Barley peroxisome 35.54 28.64
HORVU2Hr1G105240.3 Barley peroxisome 34.34 27.67
CDX78833 Canola cytosol, extracellular, plasma membrane 40.06 27.65
EES10997 Sorghum plasma membrane 34.64 27.58
TraesCS2A01G452300.1 Wheat mitochondrion 36.14 27.46
CDX90135 Canola plasma membrane 25.9 26.63
CDX99494 Canola plasma membrane 39.76 25.73
TraesCS2B01G474000.1 Wheat cytosol, peroxisome, plasma membrane 34.64 25.73
CDY29404 Canola plasma membrane 29.52 25.72
CDY35721 Canola plasma membrane 24.7 25.71
CDY39353 Canola plasma membrane 29.52 25.65
CDY22619 Canola plasma membrane 28.92 25.46
CDX93469 Canola plasma membrane 29.52 25.39
CDX94937 Canola plasma membrane 28.92 25.33
CDY46618 Canola plasma membrane 17.17 25.11
CDY29403 Canola plasma membrane 28.92 24.94
CDY39352 Canola plasma membrane 28.92 24.62
CDX90136 Canola plasma membrane 25.9 24.43
CDY35722 Canola plasma membrane 25.6 24.01
CDX94595 Canola plasma membrane 25.0 23.78
CDY53149 Canola plasma membrane 27.71 23.41
CDX96651 Canola plasma membrane 29.82 23.4
CDY67986 Canola plasma membrane 26.2 23.32
CDY29401 Canola plasma membrane 24.1 23.26
CDX94594 Canola extracellular, plasma membrane 24.4 23.21
CDY64442 Canola plasma membrane 26.51 22.51
CDY27947 Canola plasma membrane 23.49 22.35
CDY17197 Canola extracellular, plasma membrane 23.49 22.22
CDY72169 Canola plasma membrane 16.87 22.13
CDX76826 Canola cytosol, peroxisome, plasma membrane 25.0 21.9
CDY15687 Canola plasma membrane 19.28 21.12
CDY34789 Canola cytosol, peroxisome, plasma membrane 24.1 21.11
CDY12422 Canola plasma membrane 23.49 20.74
CDY29741 Canola plasma membrane 23.49 20.69
CDY31805 Canola plasma membrane 27.41 20.54
CDY63252 Canola extracellular 26.51 20.37
CDY16284 Canola plasma membrane 22.89 20.16
CDY09527 Canola plasma membrane 18.98 19.69
CDY02338 Canola plasma membrane 18.67 19.38
CDY09533 Canola plasma membrane 18.67 19.38
HORVU5Hr1G019740.1 Barley cytosol, plastid 18.98 18.92
CDX73177 Canola plasma membrane 22.59 17.73
Zm00001d026042_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 35.24 17.38
CDY63702 Canola plasma membrane 28.92 12.52
CDX96650 Canola cytosol, plasma membrane, vacuole 0.0 0.0
Protein Annotations
EnsemblPlants:CDX75141EnsemblPlantsGene:GSBRNA2T00118909001GO:A0A078CDI3GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021InterPro:PUP_plantPANTHER:PTHR31376
PANTHER:PTHR31376:SF2PFAM:PF16913ProteinID:CDX75141ProteinID:CDX75141.1SEG:segTMHMM:TMhelix
UniParc:UPI0004EDB3A9MapMan:24.2.1.6::::
Description
BnaC09g25410D
Coordinates
chrLK031803:+:859994..861571
Molecular Weight (calculated)
37089.7 Da
IEP (calculated)
4.811
GRAVY (calculated)
0.686
Length
332 amino acids
Sequence
(BLAST)
001: MIHPSVNSPL NIDEEESFLL KEEDEASSEE VLPQIMHLKR SQWWIFVFIS IFFLISAQAV AVLLGRFYYD QGGNSKWIST LVQTVGFPIL YLPLCLLPAS
101: PRTSYCSFKT LLIFNAVFSY LINSEKITFW TVMSIFFLTV SALVIALDDD SNSPSGGSKW IYVIGCLLTL LASLIYSLQL SLMQFSFEKI IRKETFAMVL
201: EMQIYTSLVA SCVSVIGLFA SGEWKMLRME MEEFHKGHVS YVLTLVGTSV SWQLGSVSAV ALIFLVSSLF SNLIGTLSLI VTPLAALVVF DDKLTVAKIA
301: AIIFAIPGVA FYMYKNYLDG LIVERARESL AD
Best Arabidopsis Sequence Match ( AT4G08700.1 )
(BLAST)
001: MDEEEAMLLL KEEDEGTRRT SVPTQLMKLK RTHWWILVFI SIFFLISAQA IAVLLGRFYY NEGGNSKWIS TLVQTCGFPI LYLPLCFLPA SHSSSSSCSF
101: KTLVWIYLSL GFAIGLDNLL YSFGLLYLSA STYSILCSSQ LAFNGVFSYY INSQKITCLI LFSVLFLSVS AVLVSLDDDS NSPSGDSKWS YLIGCLCTVF
201: ASLIYSLQLS LMQFSFENVL KSETFSMVLE MQIYTSLVAS CVAVIGLFAS GEWMLLSVEM EEFHEGQVIY VLTLVGTAVS WQLGSVGAVA LIFLVSSLFS
301: NLIGTLSLIV TPLAAIAVFH DKLTEVKMVA MLIAFMGFGF YIYQNYLDDL KVQRAREAQA E
Arabidopsis Description
PUP13Probable purine permease 13 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY83]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.