CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
plasma membrane 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, extracellular, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013290.1-P	Field mustard	cytosol, extracellular, plasma membrane	97.71	98.33
AT4G18190.1	Thale cress	plasma membrane	65.7	81.65
CDX99494	Canola	plasma membrane	85.45	80.12
CDY08900	Canola	plasma membrane	32.64	50.48
CDX76537	Canola	plasma membrane	39.09	48.21
CDY12545	Canola	plasma membrane	29.73	47.99
CDY08897	Canola	plasma membrane	38.67	47.57
CDY36342	Canola	endoplasmic reticulum, plasma membrane, vacuole	29.52	47.49
CDY08899	Canola	cytosol, peroxisome, plasma membrane	38.46	47.44
CDX78835	Canola	plasma membrane	38.25	47.06
CDX76538	Canola	plasma membrane	38.25	46.94
CDX99493	Canola	plasma membrane	38.05	46.68
CDX76536	Canola	plasma membrane	28.27	46.42
CDY01525	Canola	plasma membrane	36.17	46.03
CDX90414	Canola	plasma membrane	35.55	45.6
CDY08895	Canola	plasma membrane	37.01	45.06
CDX76540	Canola	plasma membrane	37.01	44.84
CDY54350	Canola	plasma membrane	27.86	40.36
CDX75141	Canola	plasma membrane	27.65	40.06
CDY14989	Canola	plasma membrane	34.51	40.0
CDX71327	Canola	plasma membrane	34.3	39.66
CDX90136	Canola	plasma membrane	23.7	32.39
CDY35722	Canola	plasma membrane	23.49	31.92
CDY27947	Canola	plasma membrane	23.08	31.81
CDY17197	Canola	extracellular, plasma membrane	23.08	31.62
CDY12422	Canola	plasma membrane	23.7	30.32
CDX94594	Canola	extracellular, plasma membrane	21.83	30.09
CDY29741	Canola	plasma membrane	23.49	29.97
CDY16284	Canola	plasma membrane	23.49	29.97
CDX94595	Canola	plasma membrane	21.62	29.8
CDX90135	Canola	plasma membrane	19.96	29.72
CDY15687	Canola	plasma membrane	18.71	29.7
CDY46618	Canola	plasma membrane	13.72	29.07
CDY35721	Canola	plasma membrane	18.71	28.21
CDY64442	Canola	plasma membrane	22.66	27.88
CDY72169	Canola	plasma membrane	14.55	27.67
CDY39353	Canola	plasma membrane	21.83	27.49
CDY29404	Canola	plasma membrane	21.41	27.03
CDY53149	Canola	plasma membrane	22.04	26.97
CDY09527	Canola	plasma membrane	17.88	26.88
CDY67986	Canola	plasma membrane	20.79	26.81
CDY29401	Canola	plasma membrane	19.13	26.74
CDX94937	Canola	plasma membrane	21.0	26.65
CDY09533	Canola	plasma membrane	17.67	26.56
CDY02338	Canola	plasma membrane	17.46	26.25
CDY29403	Canola	plasma membrane	21.0	26.23
CDY22619	Canola	plasma membrane	20.17	25.73
CDY63252	Canola	extracellular	23.08	25.69
CDX93469	Canola	plasma membrane	20.58	25.65
CDY39352	Canola	plasma membrane	20.17	24.87
CDX96651	Canola	plasma membrane	21.0	23.88
CDY34789	Canola	cytosol, peroxisome, plasma membrane	18.5	23.48
CDX76826	Canola	cytosol, peroxisome, plasma membrane	18.5	23.48
CDY31805	Canola	plasma membrane	21.41	23.25
CDX73177	Canola	plasma membrane	16.22	18.44
CDY63702	Canola	plasma membrane	21.21	13.3
CDX96650	Canola	cytosol, plasma membrane, vacuole	0.21	0.64

Protein Annotations

Gene3D:2.160.20.10	MapMan:24.2.1.6	GO:A0A078CUJ5	EnsemblPlants:CDX78833	ProteinID:CDX78833	ProteinID:CDX78833.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00131305001	InterPro:IPR012334	PFAM:PF16913	PANTHER:PTHR31376
PANTHER:PTHR31376:SF17	InterPro:PUP_plant	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF103481	SUPFAM:SSF51126
TMHMM:TMhelix	UniParc:UPI0004EED400	SEG:seg	:	:	:

Description

BnaA01g09000D

Coordinates

chrLK031816:+:331425..334374

Molecular Weight (calculated)

53265.2 Da

IEP (calculated)

6.315

GRAVY (calculated)

0.204

Length

481 amino acids

Sequence
(BLAST)

001: MSSVNSKFFH IALVECRDFK GTRLNITGAS DSPNSDGTHI VSIGQGNFQI TIASIKCGPG HGISFLLSVA SKVKLSEIYF KNIRGTSSSR VAMEVESETQ
101: ELHIHVNGEP ERKSSTEQRS HNYSWRLRVS LYVILLLAGE TIATLLGRLY YDKGGNSIWL ETLVQLVGFP LTLPCYYYIK PDSSSKTNNL TNKTTTSFLT
201: LPLVYIGLGL LAAGHSVLYS FGLLYLPVST FSLISASQLA FNAVFSYFLN SQKFTPCILN SLVLLTTSST LLVIQPESES STSNPSSKYN YVIGYICAIG
301: SSAGYSLVLS LTDYAFEKIL KKYTFKAILD MVTYQSLVAT CAVVVGLFVS GGWKMLRTEM EEFRLGKNSY ILINIGAVIS WQACWIGSVG LILEVSSLFS
401: NVISTLCLPV VPVLAVVFFR DEMSGIKLIA MFLAIWGFVS YAYQHYVDDP KQEEEQEIPQ GEEEEKETQE EKNWNSVPSL Y

Best Arabidopsis Sequence Match ( AT4G18190.1 )
(BLAST)

001: MMELESETQE LHLHVNGEPE GKFSTEERSH KYSWRLRVSL YVTLLLAGET IATLLGRLYY EKGGKSTWLE TLVQLVGFPL TLPCYYYLKP EPSKTKTITK
101: KTTSSFLTLS LVYIGLGLLV AGHCILYSFG LLYLPVSTFS LISASQLAFN AVFSYFLNSQ KITPFILNSL VLLTISSTLL VIQHEPESPS STSKSAAKSK
201: YVIGYICAVG SSAGYSLVLS LTDYAFEKIL KKYTFKAILD MATYPSMVAT CVVVVGLFGS GGWKKLSTEM EEFQLGKSSY ILINIGSTIS WQACLIGSVG
301: LIIEVSSLFS NVISTLCLPV VPVLAVVFFR DEMSGIKLVA MFLAIWGFVS YGYQHYVNDR KPEEDQELPQ SKEEEEQKQV DTIHVQA

Arabidopsis Description

PUP6Probable purine permease 6 [Source:UniProtKB/Swiss-Prot;Acc:O49722]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.