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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 2
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX95295
CDY39936

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18220.1 CDX95295 AT2G13650.1 15299147
AT4G18220.1 CDY39936 AT2G13650.1 15299147
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra013292.1-P Field mustard plasma membrane 96.16 96.41
CDX99493 Canola plasma membrane 94.88 94.64
CDX76537 Canola plasma membrane 83.89 84.1
CDY08900 Canola plasma membrane 66.75 83.92
CDY08899 Canola cytosol, peroxisome, plasma membrane 83.63 83.85
CDY08897 Canola plasma membrane 82.61 82.61
CDX76536 Canola plasma membrane 61.38 81.91
CDX76538 Canola plasma membrane 81.07 80.87
AT4G18210.1 Thale cress plasma membrane 79.8 80.0
AT4G18220.1 Thale cress plasma membrane 79.28 79.49
VIT_10s0003g02850.t01 Wine grape plasma membrane 53.2 56.22
KRH45390 Soybean plasma membrane 45.01 55.0
CDY01525 Canola plasma membrane 50.13 51.85
CDX90414 Canola plasma membrane 49.36 51.47
CDY08895 Canola plasma membrane 51.15 50.63
KRH46353 Soybean plasma membrane 53.71 50.6
CDY36342 Canola endoplasmic reticulum, plasma membrane, vacuole 38.62 50.5
CDX76540 Canola plasma membrane 51.15 50.38
CDY12545 Canola plasma membrane 38.11 50.0
KRG98518 Soybean plasma membrane 52.94 50.0
Solyc02g071110.2.1 Tomato plasma membrane 46.04 47.49
VIT_10s0003g02840.t01 Wine grape plasma membrane 52.94 46.94
PGSC0003DMT400025116 Potato plasma membrane 46.04 46.63
PGSC0003DMT400035009 Potato endoplasmic reticulum, extracellular 17.65 45.7
Solyc02g071080.1.1 Tomato endoplasmic reticulum, plasma membrane, plastid, vacuole 27.88 43.78
PGSC0003DMT400025123 Potato plasma membrane 43.22 43.11
Solyc02g071060.2.1 Tomato plasma membrane 42.71 42.28
PGSC0003DMT400025125 Potato plasma membrane 42.2 42.09
Solyc02g071050.2.1 Tomato plasma membrane 41.18 41.6
CDY14989 Canola plasma membrane 43.48 40.96
CDX71327 Canola plasma membrane 43.22 40.62
Solyc02g071090.2.1 Tomato plasma membrane 38.11 39.73
PGSC0003DMT400025122 Potato plasma membrane 38.11 39.52
Solyc02g071100.2.1 Tomato nucleus 37.85 39.47
CDY54350 Canola plasma membrane 32.99 38.86
Solyc03g005810.2.1 Tomato endoplasmic reticulum, extracellular, plastid 24.04 38.37
CDX78833 Canola cytosol, extracellular, plasma membrane 47.06 38.25
PGSC0003DMT400025118 Potato plasma membrane 37.6 37.4
CDX75141 Canola plasma membrane 31.71 37.35
PGSC0003DMT400035010 Potato endoplasmic reticulum, peroxisome, plasma membrane 35.81 36.94
CDX99494 Canola plasma membrane 47.06 35.87
CDY17197 Canola extracellular, plasma membrane 29.41 32.76
Solyc03g005820.2.1 Tomato plasma membrane 34.78 32.38
CDY27947 Canola plasma membrane 28.39 31.81
CDX90136 Canola plasma membrane 28.39 31.53
CDY12422 Canola plasma membrane 30.18 31.38
CDY15687 Canola plasma membrane 24.3 31.35
CDY35722 Canola plasma membrane 28.13 31.07
CDY29741 Canola plasma membrane 29.67 30.77
CDY16284 Canola plasma membrane 29.67 30.77
CDX94594 Canola extracellular, plasma membrane 27.37 30.66
CDX94595 Canola plasma membrane 27.11 30.37
CDY46618 Canola plasma membrane 17.14 29.52
CDY72169 Canola plasma membrane 18.93 29.25
CDY09527 Canola plasma membrane 23.27 28.44
CDY02338 Canola plasma membrane 23.27 28.44
CDY09533 Canola plasma membrane 23.02 28.12
CDX90135 Canola plasma membrane 21.99 26.63
CDY67986 Canola plasma membrane 25.32 26.54
CDY29404 Canola plasma membrane 25.58 26.25
CDY29401 Canola plasma membrane 23.02 26.16
CDY39353 Canola plasma membrane 25.06 25.65
CDY64442 Canola plasma membrane 25.58 25.58
CDY35721 Canola plasma membrane 20.72 25.39
CDY22619 Canola plasma membrane 24.04 24.93
CDY39352 Canola plasma membrane 24.81 24.87
CDY34789 Canola cytosol, peroxisome, plasma membrane 24.04 24.8
CDY53149 Canola plasma membrane 24.81 24.68
CDY29403 Canola plasma membrane 24.3 24.68
CDX94937 Canola plasma membrane 23.79 24.54
CDX76826 Canola cytosol, peroxisome, plasma membrane 23.53 24.27
CDX93469 Canola plasma membrane 23.02 23.32
CDY63252 Canola extracellular 25.58 23.15
CDX96651 Canola plasma membrane 24.81 22.93
CDY31805 Canola plasma membrane 25.06 22.12
CDX73177 Canola plasma membrane 18.67 17.26
CDY63702 Canola plasma membrane 24.55 12.52
CDX96650 Canola cytosol, plasma membrane, vacuole 0.0 0.0
Protein Annotations
MapMan:24.2.1.6GO:A0A078CPN6EnsemblPlants:CDX78835ProteinID:CDX78835ProteinID:CDX78835.1GO:GO:0003674
GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00131307001PFAM:PF16913PANTHER:PTHR31376PANTHER:PTHR31376:SF17InterPro:PUP_plantSUPFAM:SSF103481
TMHMM:TMhelixUniParc:UPI0004EF0DEBSEG:seg:::
Description
BnaA01g09020D
Coordinates
chrLK031816:+:336159..337417
Molecular Weight (calculated)
43254.9 Da
IEP (calculated)
9.485
GRAVY (calculated)
0.315
Length
391 amino acids
Sequence
(BLAST)
001: MNGDQELQVI VQQGKEPNKT AQEERNQTGV THSKTYKRWL RVAVYTFFVI SGQSVATILG RIYYDNGGNS KWLATVVQLV GFPVLLPYYL LSIKTHTTTN
101: IDGKAASLRN RVLVYVVLGV LVGADCYLYS IGLLHLPVST YSLICASQLA FNAFFSYFLN SQKLTPIILN SLLLLTISST LLAFNNEDSN SQKVTKAQYV
201: TSFLCTIGAS AGFGLVLSLQ QLAFRRVLKR QTFTEVMDMI IYMSLVASCV SLVGLFASSE WKTLSSEMDN YKLGKVSYVM NLVWTAITWQ VFNIGGTGLI
301: FELSSLFSNA ISVLGLPVVP IMAVIIFRDK MNGLKVISMV LAIWGFMSYV YQHYLDDKKM KRSVGILKAE SSVPPEAEGP TNGQKTETSA S
Best Arabidopsis Sequence Match ( AT4G18220.1 )
(BLAST)
001: MKGDQEVQVI VQQGKEPIPT DQDERSSVSG SQTKLSHSNT YKRWLRVAIY TFFVISGQSV ATILGRLYYE NGGNSKWLAT VVQLVGFPIL LPYHLLSVKT
101: HTTTQRDGKL TSLRNRALVY IVLGLLVGAA CYLYSIGLLY LPVSTLSLIC ASQLAFTAFF SYLLNSQKLT PIILNSLFLL TISSTLLAFN NEESDSKKVT
201: KGEYVKGFVC TVGASAGFGL LLSLQQLAFR KVLKKQTFSE VINMIIYMSL VASCVSVVGL FASSEWKTLS SEMENYKLGK VSYVMNLVWT AVTWQVFSIG
301: CTGLIFELSS LFSNAISALG LPVVPILAVI IFHDKMNGLK VISMILAIWG FVSYVYQQYL DETNLKKSNE IPTTESPDRP EAEGSSEQSK
Arabidopsis Description
PUP21Purine permease 21 [Source:UniProtKB/Swiss-Prot;Acc:O49726]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.