CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76536
CDX76537
CDX76538
CDX78835
CDX99493
CDY08897
CDY08899
CDY08900

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13650.1	CDX76536	AT4G18220.1	15299147
AT2G13650.1	CDX76537	AT4G18220.1	15299147
AT2G13650.1	CDX76538	AT4G18220.1	15299147
AT2G13650.1	CDX78835	AT4G18220.1	15299147
AT2G13650.1	CDX99493	AT4G18220.1	15299147
AT2G13650.1	CDY08897	AT4G18220.1	15299147
AT2G13650.1	CDY08899	AT4G18220.1	15299147
AT2G13650.1	CDY08900	AT4G18220.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39936	Canola	cytosol, peroxisome, plasma membrane	97.3	98.48
Bra027909.1-P	Field mustard	cytosol, peroxisome, plasma membrane	96.7	97.87
AT2G13650.1	Thale cress	cytosol, peroxisome, plasma membrane	93.39	93.39
VIT_04s0044g01330.t01	Wine grape	plasma membrane	81.68	80.47
GSMUA_Achr8P34420_001	Banana	cytosol, peroxisome, plasma membrane	78.38	76.54
GSMUA_Achr8P34410_001	Banana	plasma membrane	77.18	76.49
KRH53900	Soybean	cytosol, peroxisome, plasma membrane	76.28	74.27
KRH64040	Soybean	cytosol, peroxisome, plasma membrane	75.68	73.68
Zm00001d020453_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	21.62	68.57
Zm00001d009871_P001	Maize	endoplasmic reticulum, extracellular, vacuole	22.82	67.86
Zm00001d024441_P001	Maize	extracellular	14.11	64.38
GSMUA_Achr1P16960_001	Banana	extracellular	76.58	60.0
TraesCS4A01G257100.1	Wheat	cytosol, peroxisome, plasma membrane	60.66	59.76
TraesCS7D01G321000.2	Wheat	cytosol, peroxisome, plasma membrane	60.36	54.62
TraesCS7A01G323600.1	Wheat	cytosol, peroxisome, plasma membrane	60.36	54.62
Os08t0107400-01	Rice	plastid	55.56	52.86
TraesCS4B01G057400.1	Wheat	cytosol, peroxisome, plasma membrane	60.96	51.01
TraesCS4D01G057600.1	Wheat	cytosol, peroxisome, plasma membrane	60.66	50.75
Zm00001d049725_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	59.76	47.38
HORVU7Hr1G077470.1	Barley	plastid	59.46	47.14
CDY06248	Canola	peroxisome, plasma membrane, plastid	51.05	46.96
OQU79763	Sorghum	mitochondrion	60.06	46.84
HORVU4Hr1G009620.19	Barley	cytosol, peroxisome	57.96	46.62
CDY09926	Canola	nucleus, peroxisome, plasma membrane	50.45	46.41
Zm00001d035015_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	50.15	46.01
CDY10265	Canola	nucleus, peroxisome, plasma membrane	50.75	45.07
CDY06695	Canola	nucleus, peroxisome, plasma membrane	50.75	44.71
PGSC0003DMT400080283	Potato	cytosol	21.92	39.89
Solyc11g065020.1.1	Tomato	cytosol	23.72	39.11
CDY05069	Canola	cytosol, endoplasmic reticulum, plasma membrane	7.81	24.76
CDY65829	Canola	cytosol, peroxisome, plastid	13.21	21.46

Protein Annotations

EnsemblPlants:CDX95295	EnsemblPlantsGene:GSBRNA2T00100949001	GO:A0A078E0W3	InterPro:Sugar_P_trans_dom	PANTHER:PTHR44371	PFAM:PF03151
ProteinID:CDX95295	ProteinID:CDX95295.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE77D7	MapMan:24.2.1.1.4

Description

BnaC09g15750D

Coordinates

chrLK031887:+:1357852..1360679

Molecular Weight (calculated)

36684.7 Da

IEP (calculated)

9.692

GRAVY (calculated)

0.607

Length

333 amino acids

Sequence
(BLAST)

001: MKSYEHDGVD LEDGKTRKAG GDKPTLRKIP NQALLSGLAY CVSSCSMILV NKFVLSSYNF NAGIFLMLYQ NFVSVIIVMA LSVMGLITTE PLTLRLIKVW
101: FPVNVIFVGM LITSMFSLKY INVAMVTVLK NVTNVITAVG EMYLFNKHHD NKVWLALFLM IISAVSGGIT DLSFNAVGYA WQIANCFLTA SYSLTLRKTM
201: DTAKQVTQSG NLNEFSMVLL NNTLSLPLGL ILSFAFNEID YLYNTPLLRL PGFWMVMTLS GLLGLAISFT SMWFLHQTGA TTYSLVGSLN KIPLSIAGIV
301: LFHVPTSLQN SASILFGLVA GVVFARAKMR EKS

Best Arabidopsis Sequence Match ( AT2G13650.3 )
(BLAST)

001: MKLYEHDGVD LEDGKTVKSG GDKPIPRKIH NRALLSGLAY CISSCSMILV NKFVLSSYNF NAGIFLMLYQ NFVSVIIVVG LSLMGLITTE PLTLRLMKVW
101: FPVNVIFVGM LITSMFSLKY INVAMVTVLK NVTNVITAVG EMYLFNKQHD NRVWAALFLM IISAVSGGIT DLSFNAVGYA WQIANCFLTA SYSLTLRKTM
201: DTAKQVTQSG NLNEFSMVLL NNTLSLPLGL LLSYFFNEMD YLYQTPLLRL PSFWMVMTLS GLLGLAISFT SMWFLHQTGA TTYSLVGSLN KIPLSIAGIV
301: LFNVPTSLQN SASILFGLVA GVVFARAKMR EKS

Arabidopsis Description

GONST1GDP-mannose transporter (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1B0VP09]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.