Factsheet for VIT_04s0044g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 3
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g02840.t01
VIT_10s0003g02850.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13650.1	VIT_10s0003g02840.t01	AT4G18220.1	15299147
AT2G13650.1	VIT_10s0003g02850.t01	AT4G18220.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027909.1-P	Field mustard	cytosol, peroxisome, plasma membrane	80.18	82.37
CDY39936	Canola	cytosol, peroxisome, plasma membrane	80.18	82.37
CDX95295	Canola	cytosol, peroxisome, plasma membrane	80.47	81.68
AT2G13650.1	Thale cress	cytosol, peroxisome, plasma membrane	79.88	81.08
GSMUA_Achr8P34420_001	Banana	cytosol, peroxisome, plasma membrane	80.18	79.47
GSMUA_Achr8P34410_001	Banana	plasma membrane	78.99	79.46
KRH53900	Soybean	cytosol, peroxisome, plasma membrane	80.18	79.24
KRH64040	Soybean	cytosol, peroxisome, plasma membrane	78.4	77.49
Zm00001d009871_P001	Maize	endoplasmic reticulum, extracellular, vacuole	22.19	66.96
Zm00001d020453_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	20.71	66.67
GSMUA_Achr1P16960_001	Banana	extracellular	80.18	63.76
Zm00001d024441_P001	Maize	extracellular	13.61	63.01
TraesCS4A01G257100.1	Wheat	cytosol, peroxisome, plasma membrane	60.06	60.06
TraesCS7A01G323600.1	Wheat	cytosol, peroxisome, plasma membrane	61.54	56.52
TraesCS7D01G321000.2	Wheat	cytosol, peroxisome, plasma membrane	61.24	56.25
Os08t0107400-01	Rice	plastid	55.62	53.71
TraesCS4D01G057600.1	Wheat	cytosol, peroxisome, plasma membrane	60.06	51.01
TraesCS4B01G057400.1	Wheat	cytosol, peroxisome, plasma membrane	59.17	50.25
HORVU7Hr1G077470.1	Barley	plastid	60.35	48.57
Zm00001d049725_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	58.58	47.14
OQU79763	Sorghum	mitochondrion	58.88	46.6
HORVU4Hr1G009620.19	Barley	cytosol, peroxisome	56.8	46.38
Zm00001d035015_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	49.11	45.73
VIT_06s0004g06270.t01	Wine grape	peroxisome	51.18	43.69
PGSC0003DMT400080283	Potato	cytosol	22.78	42.08
Solyc11g065020.1.1	Tomato	cytosol	24.85	41.58

Protein Annotations

MapMan:24.2.1.1.4	ProteinID:CCB60409	ProteinID:CCB60409.1	UniProt:F6I0E3	EMBL:FN596506	GO:GO:0003674
GO:GO:0005215	GO:GO:0005338	GO:GO:0005457	GO:GO:0005458	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0008150	GO:GO:0015783
GO:GO:0016020	GO:GO:0016021	GO:GO:1990570	PFAM:PF03151	PANTHER:PTHR44371	SUPFAM:SSF103481
InterPro:Sugar_P_trans_dom	TMHMM:TMhelix	UniParc:UPI00021094A3	ArrayExpress:VIT_04s0044g01330	EnsemblPlantsGene:VIT_04s0044g01330	EnsemblPlants:VIT_04s0044g01330.t01

Description

No Description!

Coordinates

chr4:+:22877129..22885027

Molecular Weight (calculated)

37577.5 Da

IEP (calculated)

9.475

GRAVY (calculated)

0.576

Length

338 amino acids

Sequence
(BLAST)

001: MKPLGSEETD LEDGKLEKDR EKSVRSNRVV RIHNQALLSG FAYCISSCSM ILVNKFVLSS YDFNAGISLM IYQNLVSVIV VTVLSFFGLI TTEPLTWKLI
101: KVWLPVNVIF VGMLVTSMFS LKYINVAMVT VLKNVTNVIT AVGEMYLFNK HHDNRVWAAL FLMIISAISG GITDLSFNGI GYTWQIINCF LTASYSLTLR
201: RVMDTAKQVT KSGNLNEFSM VLLNNTLSLP LGVILMFVFN EVDYLSTTPL LRLPTFWLVM TLSGFLGLAI SFSSMWFLHQ TGATTYSLVG SLNKIPLSVA
301: GIVLFHVPTS LENSASIFFG LVAGVFFAKA KMRERSQS

Best Arabidopsis Sequence Match ( AT2G13650.3 )
(BLAST)

001: MKLYEHDGVD LEDGKTVKSG GDKPIPRKIH NRALLSGLAY CISSCSMILV NKFVLSSYNF NAGIFLMLYQ NFVSVIIVVG LSLMGLITTE PLTLRLMKVW
101: FPVNVIFVGM LITSMFSLKY INVAMVTVLK NVTNVITAVG EMYLFNKQHD NRVWAALFLM IISAVSGGIT DLSFNAVGYA WQIANCFLTA SYSLTLRKTM
201: DTAKQVTQSG NLNEFSMVLL NNTLSLPLGL LLSYFFNEMD YLYQTPLLRL PSFWMVMTLS GLLGLAISFT SMWFLHQTGA TTYSLVGSLN KIPLSIAGIV
301: LFNVPTSLQN SASILFGLVA GVVFARAKMR EKS

Arabidopsis Description

GONST1GDP-mannose transporter (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1B0VP09]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.