Factsheet for Solyc11g065020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071050.2.1
Solyc02g071060.2.1
Solyc02g071080.1.1
Solyc02g071090.2.1
Solyc02g071100.2.1
Solyc02g071110.2.1
Solyc03g005810.2.1
Solyc03g005820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13650.1	Solyc02g071050.2.1	AT4G18220.1	15299147
AT2G13650.1	Solyc02g071060.2.1	AT4G18220.1	15299147
AT2G13650.1	Solyc02g071080.1.1	AT4G18220.1	15299147
AT2G13650.1	Solyc02g071090.2.1	AT4G18220.1	15299147
AT2G13650.1	Solyc02g071100.2.1	AT4G18220.1	15299147
AT2G13650.1	Solyc02g071110.2.1	AT4G18220.1	15299147
AT2G13650.1	Solyc03g005810.2.1	AT4G18220.1	15299147
AT2G13650.1	Solyc03g005820.2.1	AT4G18220.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080283	Potato	cytosol	76.73	84.7
Zm00001d020453_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	17.82	34.29
Zm00001d009871_P001	Maize	endoplasmic reticulum, extracellular, vacuole	17.82	32.14
Solyc01g008690.2.1	Tomato	plasma membrane	45.54	26.74
VIT_04s0044g01330.t01	Wine grape	plasma membrane	41.58	24.85
GSMUA_Achr8P34410_001	Banana	plasma membrane	40.59	24.4
GSMUA_Achr8P34420_001	Banana	cytosol, peroxisome, plasma membrane	41.09	24.34
AT2G13650.1	Thale cress	cytosol, peroxisome, plasma membrane	39.6	24.02
CDX95295	Canola	cytosol, peroxisome, plasma membrane	39.11	23.72
Bra027909.1-P	Field mustard	cytosol, peroxisome, plasma membrane	38.61	23.71
CDY39936	Canola	cytosol, peroxisome, plasma membrane	38.61	23.71
KRH64040	Soybean	cytosol, peroxisome, plasma membrane	39.6	23.39
KRH53900	Soybean	cytosol, peroxisome, plasma membrane	39.6	23.39
Os08t0107400-01	Rice	plastid	39.6	22.86
TraesCS4A01G257100.1	Wheat	cytosol, peroxisome, plasma membrane	37.62	22.49
Zm00001d035015_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	39.6	22.04
TraesCS7A01G323600.1	Wheat	cytosol, peroxisome, plasma membrane	38.61	21.2
TraesCS7D01G321000.2	Wheat	cytosol, peroxisome, plasma membrane	38.61	21.2
GSMUA_Achr1P16960_001	Banana	extracellular	44.55	21.18
TraesCS4B01G057400.1	Wheat	cytosol, peroxisome, plasma membrane	41.09	20.85
TraesCS4D01G057600.1	Wheat	cytosol, peroxisome, plasma membrane	40.59	20.6
Zm00001d049725_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	41.58	20.0
OQU79763	Sorghum	mitochondrion	40.59	19.2
HORVU4Hr1G009620.19	Barley	cytosol, peroxisome	39.11	19.08
HORVU7Hr1G077470.1	Barley	plastid	38.12	18.33
Solyc06g076830.1.1	Tomato	plastid	30.69	13.9
Zm00001d024441_P001	Maize	extracellular	3.47	9.59
Solyc11g065030.1.1	Tomato	extracellular	3.47	3.14

Protein Annotations

EnsemblPlants:Solyc11g065020.1.1	EnsemblPlantsGene:Solyc11g065020.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR44371
PANTHER:PTHR44371:SF1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002769806	UniProt:K4D9B5	MapMan:35.1

Description

No Description!

Coordinates

chr11:+:50337357..50340803

Molecular Weight (calculated)

22434.3 Da

IEP (calculated)

7.575

GRAVY (calculated)

0.197

Length

202 amino acids

Sequence
(BLAST)

001: MNPRSLPVAA SLDAPDPVLE RVLIEDTKNS SQGGDRNLAH QPILLDQVSK SFRGEVVNRS LSMKAANRND EDLENGMLEK DIEKSVRSNK GFTVHNKALL
101: SGIAYCISSC SMILVNKYVL SSYDFNAGIS LMVYQNFVSV VVVSSLRVFG IISTEPLTWR LVRVWLPVNV IFVGMLITSM FRSHALHLLL LDAQFSEISF
201: SV

Best Arabidopsis Sequence Match ( AT2G13650.3 )
(BLAST)

001: MKLYEHDGVD LEDGKTVKSG GDKPIPRKIH NRALLSGLAY CISSCSMILV NKFVLSSYNF NAGIFLMLYQ NFVSVIIVVG LSLMGLITTE PLTLRLMKVW
101: FPVNVIFVGM LITSMFSLKY INVAMVTVLK NVTNVITAVG EMYLFNKQHD NRVWAALFLM IISAVSGGIT DLSFNAVGYA WQIANCFLTA SYSLTLRKTM
201: DTAKQVTQSG NLNEFSMVLL NNTLSLPLGL LLSYFFNEMD YLYQTPLLRL PSFWMVMTLS GLLGLAISFT SMWFLHQTGA TTYSLVGSLN KIPLSIAGIV
301: LFNVPTSLQN SASILFGLVA GVVFARAKMR EKS

Arabidopsis Description

GONST1GDP-mannose transporter (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1B0VP09]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.