CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
golgi 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98518
KRH45390
KRH46353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13650.1	KRG98518	AT4G18220.1	15299147
AT2G13650.1	KRH45390	AT4G18220.1	15299147
AT2G13650.1	KRH46353	AT4G18220.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53900	Soybean	cytosol, peroxisome, plasma membrane	93.57	93.57
VIT_04s0044g01330.t01	Wine grape	plasma membrane	77.49	78.4
Bra027909.1-P	Field mustard	cytosol, peroxisome, plasma membrane	73.98	76.9
CDY39936	Canola	cytosol, peroxisome, plasma membrane	73.68	76.6
CDX95295	Canola	cytosol, peroxisome, plasma membrane	73.68	75.68
AT2G13650.1	Thale cress	cytosol, peroxisome, plasma membrane	73.39	75.38
GSMUA_Achr8P34420_001	Banana	cytosol, peroxisome, plasma membrane	74.85	75.07
GSMUA_Achr8P34410_001	Banana	plasma membrane	73.1	74.4
Zm00001d020453_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	21.64	70.48
Zm00001d009871_P001	Maize	endoplasmic reticulum, extracellular, vacuole	22.51	68.75
Zm00001d024441_P001	Maize	extracellular	14.33	67.12
GSMUA_Achr1P16960_001	Banana	extracellular	75.15	60.47
TraesCS4A01G257100.1	Wheat	cytosol, peroxisome, plasma membrane	59.65	60.35
TraesCS7A01G323600.1	Wheat	cytosol, peroxisome, plasma membrane	59.06	54.89
TraesCS7D01G321000.2	Wheat	cytosol, peroxisome, plasma membrane	58.77	54.62
Os08t0107400-01	Rice	plastid	53.8	52.57
TraesCS4D01G057600.1	Wheat	cytosol, peroxisome, plasma membrane	59.65	51.26
TraesCS4B01G057400.1	Wheat	cytosol, peroxisome, plasma membrane	59.06	50.75
Zm00001d049725_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	59.36	48.33
HORVU7Hr1G077470.1	Barley	plastid	58.77	47.86
OQU79763	Sorghum	mitochondrion	59.06	47.31
Zm00001d035015_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	48.25	45.45
HORVU4Hr1G009620.19	Barley	cytosol, peroxisome	54.68	45.17
KRG98331	Soybean	cytosol, peroxisome, plasma membrane	48.83	42.49
Solyc11g065020.1.1	Tomato	cytosol	23.39	39.6
PGSC0003DMT400080283	Potato	cytosol	21.05	39.34

Protein Annotations

EntrezGene:100775625	MapMan:24.2.1.1.4	EMBL:ACUP02002737	EnsemblPlantsGene:GLYMA_04G212800	GO:GO:0003674	GO:GO:0005215
GO:GO:0005338	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:1990570	UniProt:I1JY19	EnsemblPlants:KRH64040	ProteinID:KRH64040	ProteinID:KRH64040.1	PFAM:PF03151
PANTHER:PTHR44371	SUPFAM:SSF103481	InterPro:Sugar_P_trans_dom	TMHMM:TMhelix	UniParc:UPI00023C01B3	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:48446448..48451806

Molecular Weight (calculated)

37895.1 Da

IEP (calculated)

9.926

GRAVY (calculated)

0.531

Length

342 amino acids

Sequence
(BLAST)

001: MKMKPSSPNE EHHDLENAKS DKDKVRTPRN GRGVKVYNQA LLSGLAYCFS SCGMILVNKL VLSSYDFNAG ISLMLYQNLI SVAIVSVLSL LGLVSTEPLT
101: WRLIKVWLPV NFIFVGMLVT SMFSLKYINV AMVTVLKNVT NVITALGEMY LFKKHHDGKV WASLFLMIIS AITGGITDLS FNAVGYAWQT LNCFLTASYS
201: LMLQRVMDTA KQVTKSGNLN EFSMVLLNNT LSVPLGIFLI IVFNEMDYLL STPLLRLPSF WLVMTFSGFL GLAISFTSMW FLHQTGATTY SLVGSLNKIP
301: LSIAGILLFK VPTSLENSAS ILFGLLAGVF FARAKIRERS QS

Best Arabidopsis Sequence Match ( AT2G13650.3 )
(BLAST)

001: MKLYEHDGVD LEDGKTVKSG GDKPIPRKIH NRALLSGLAY CISSCSMILV NKFVLSSYNF NAGIFLMLYQ NFVSVIIVVG LSLMGLITTE PLTLRLMKVW
101: FPVNVIFVGM LITSMFSLKY INVAMVTVLK NVTNVITAVG EMYLFNKQHD NRVWAALFLM IISAVSGGIT DLSFNAVGYA WQIANCFLTA SYSLTLRKTM
201: DTAKQVTQSG NLNEFSMVLL NNTLSLPLGL LLSYFFNEMD YLYQTPLLRL PSFWMVMTLS GLLGLAISFT SMWFLHQTGA TTYSLVGSLN KIPLSIAGIV
301: LFNVPTSLQN SASILFGLVA GVVFARAKMR EKS

Arabidopsis Description

GONST1GDP-mannose transporter (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1B0VP09]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.