CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
golgi 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98518
KRH45390
KRH46353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13650.1	KRG98518	AT4G18220.1	15299147
AT2G13650.1	KRH45390	AT4G18220.1	15299147
AT2G13650.1	KRH46353	AT4G18220.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64040	Soybean	cytosol, peroxisome, plasma membrane	93.57	93.57
VIT_04s0044g01330.t01	Wine grape	plasma membrane	79.24	80.18
Bra027909.1-P	Field mustard	cytosol, peroxisome, plasma membrane	74.27	77.2
CDY39936	Canola	cytosol, peroxisome, plasma membrane	74.27	77.2
CDX95295	Canola	cytosol, peroxisome, plasma membrane	74.27	76.28
AT2G13650.1	Thale cress	cytosol, peroxisome, plasma membrane	73.98	75.98
GSMUA_Achr8P34420_001	Banana	cytosol, peroxisome, plasma membrane	75.44	75.66
GSMUA_Achr8P34410_001	Banana	plasma membrane	73.68	75.0
Zm00001d020453_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	21.64	70.48
Zm00001d009871_P001	Maize	endoplasmic reticulum, extracellular, vacuole	22.81	69.64
Zm00001d024441_P001	Maize	extracellular	14.33	67.12
GSMUA_Achr1P16960_001	Banana	extracellular	76.02	61.18
TraesCS4A01G257100.1	Wheat	cytosol, peroxisome, plasma membrane	59.06	59.76
TraesCS7A01G323600.1	Wheat	cytosol, peroxisome, plasma membrane	58.48	54.35
TraesCS7D01G321000.2	Wheat	cytosol, peroxisome, plasma membrane	58.19	54.08
Os08t0107400-01	Rice	plastid	52.63	51.43
TraesCS4D01G057600.1	Wheat	cytosol, peroxisome, plasma membrane	59.06	50.75
TraesCS4B01G057400.1	Wheat	cytosol, peroxisome, plasma membrane	58.77	50.5
Zm00001d049725_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	58.77	47.86
HORVU7Hr1G077470.1	Barley	plastid	58.19	47.38
OQU79763	Sorghum	mitochondrion	59.06	47.31
Zm00001d035015_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	48.25	45.45
HORVU4Hr1G009620.19	Barley	cytosol, peroxisome	54.39	44.93
KRG98331	Soybean	cytosol, peroxisome, plasma membrane	49.42	43.0
Solyc11g065020.1.1	Tomato	cytosol	23.39	39.6
PGSC0003DMT400080283	Potato	cytosol	20.76	38.8

Protein Annotations

EMBL:ACUP02003488	EnsemblPlants:KRH53900	EnsemblPlantsGene:GLYMA_06G153600	EntrezGene:100808480	GO:GO:0003674	GO:GO:0005215
GO:GO:0005338	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:1990570	InterPro:Sugar_P_trans_dom	PANTHER:PTHR44371	PFAM:PF03151	ProteinID:KRH53900	ProteinID:KRH53900.1
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI00023C3A45	UniProt:I1KBJ5	MapMan:24.2.1.1.4	:

Description

hypothetical protein

Coordinates

chr6:+:12533184..12538572

Molecular Weight (calculated)

37860.2 Da

IEP (calculated)

10.019

GRAVY (calculated)

0.613

Length

342 amino acids

Sequence
(BLAST)

001: MKMKPSSSNE ENHDVENAKL DKVKVRTPRN GRVVKLHNQA LLSGLAYCFS SCGMILVNKF VLSSYDFNAG ISLMLYQNLI SVGIVYVLSL LGLVSTEPLT
101: WRLIKVWLPV NVIFVGMLVT SMFSLKYINV AMVTVLKNVT NVITALGEMY LFKKHHDGKV WAALFLMIIS AITGGITDLS FNAVGYAWQT VNCFLTASYS
201: LTLRRVMDTA KLVTKSGNLN EFSMVLLNNT LSLPLGIFMI IVFNEVDYLL TTPLLRLPSF WLVMTFSGFL GLAISFTSMW FLHQTGATTY SLVGSLNKIP
301: LSIAGILLFK VPTSLENSAS ILFGLLAGVF FARAKILERS QS

Best Arabidopsis Sequence Match ( AT2G13650.3 )
(BLAST)

001: MKLYEHDGVD LEDGKTVKSG GDKPIPRKIH NRALLSGLAY CISSCSMILV NKFVLSSYNF NAGIFLMLYQ NFVSVIIVVG LSLMGLITTE PLTLRLMKVW
101: FPVNVIFVGM LITSMFSLKY INVAMVTVLK NVTNVITAVG EMYLFNKQHD NRVWAALFLM IISAVSGGIT DLSFNAVGYA WQIANCFLTA SYSLTLRKTM
201: DTAKQVTQSG NLNEFSMVLL NNTLSLPLGL LLSYFFNEMD YLYQTPLLRL PSFWMVMTLS GLLGLAISFT SMWFLHQTGA TTYSLVGSLN KIPLSIAGIV
301: LFNVPTSLQN SASILFGLVA GVVFARAKMR EKS

Arabidopsis Description

GONST1GDP-mannose transporter (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1B0VP09]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.