Factsheet for PGSC0003DMT400080283

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
golgi 2
cytosol 2
plasma membrane 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400025116
PGSC0003DMT400025118
PGSC0003DMT400025122
PGSC0003DMT400025123
PGSC0003DMT400025125
PGSC0003DMT400035009
PGSC0003DMT400035010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13650.1	PGSC0003DMT400025116	AT4G18220.1	15299147
AT2G13650.1	PGSC0003DMT400025118	AT4G18220.1	15299147
AT2G13650.1	PGSC0003DMT400025122	AT4G18220.1	15299147
AT2G13650.1	PGSC0003DMT400025123	AT4G18220.1	15299147
AT2G13650.1	PGSC0003DMT400025125	AT4G18220.1	15299147
AT2G13650.1	PGSC0003DMT400035009	AT4G18220.1	15299147
AT2G13650.1	PGSC0003DMT400035010	AT4G18220.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065020.1.1	Tomato	cytosol	84.7	76.73
Zm00001d020453_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	17.49	30.48
PGSC0003DMT400011323	Potato	cytosol, peroxisome, plasma membrane	56.83	28.81
Zm00001d009871_P001	Maize	endoplasmic reticulum, extracellular, vacuole	16.94	27.68
VIT_04s0044g01330.t01	Wine grape	plasma membrane	42.08	22.78
AT2G13650.1	Thale cress	cytosol, peroxisome, plasma membrane	40.44	22.22
Os08t0107400-01	Rice	plastid	42.08	22.0
CDX95295	Canola	cytosol, peroxisome, plasma membrane	39.89	21.92
Bra027909.1-P	Field mustard	cytosol, peroxisome, plasma membrane	39.34	21.88
CDY39936	Canola	cytosol, peroxisome, plasma membrane	39.34	21.88
GSMUA_Achr8P34410_001	Banana	plasma membrane	39.89	21.73
GSMUA_Achr8P34420_001	Banana	cytosol, peroxisome, plasma membrane	39.89	21.41
KRH64040	Soybean	cytosol, peroxisome, plasma membrane	39.34	21.05
Zm00001d035015_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	41.53	20.94
KRH53900	Soybean	cytosol, peroxisome, plasma membrane	38.8	20.76
TraesCS4A01G257100.1	Wheat	cytosol, peroxisome, plasma membrane	38.25	20.71
TraesCS7A01G323600.1	Wheat	cytosol, peroxisome, plasma membrane	39.89	19.84
TraesCS7D01G321000.2	Wheat	cytosol, peroxisome, plasma membrane	39.89	19.84
TraesCS4B01G057400.1	Wheat	cytosol, peroxisome, plasma membrane	42.62	19.6
TraesCS4D01G057600.1	Wheat	cytosol, peroxisome, plasma membrane	41.53	19.1
GSMUA_Achr1P16960_001	Banana	extracellular	43.17	18.59
Zm00001d049725_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	42.62	18.57
HORVU4Hr1G009620.19	Barley	cytosol, peroxisome	40.98	18.12
OQU79763	Sorghum	mitochondrion	40.98	17.56
HORVU7Hr1G077470.1	Barley	plastid	38.25	16.67
PGSC0003DMT400078032	Potato	cytosol, nucleus, peroxisome	30.6	14.47
PGSC0003DMT400080282	Potato	endoplasmic reticulum, extracellular, plastid	2.73	2.76
Zm00001d024441_P001	Maize	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400080283	EnsemblPlantsGene:PGSC0003DMG402031251	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR44371
PANTHER:PTHR44371:SF1	PGSC:PGSC0003DMG402031251	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002966656	UniProt:M1D394
MapMan:35.1	:	:	:	:	:

Description

GDP-mannose transporter [Source:PGSC_GENE;Acc:PGSC0003DMG402031251]

Coordinates

chr11:+:36205680..36209264

Molecular Weight (calculated)

20322.8 Da

IEP (calculated)

9.163

GRAVY (calculated)

0.203

Length

183 amino acids

Sequence
(BLAST)

001: MNPRSLPVAA SLDAPDPVLE RVLIEDTKNS SHGGERNFLA HQPILLDQVS KSFRGEVVSR SFSMKAANRN DENLENGMLE NDIEKSVRSN KVVTVHNKAL
101: LSGVAYCISS CSMILVNKYV LSSYGFNAGI SLMVYQNFVS VVVVSSLRVF GIITTEPLTW RLVRVWLPVN VIFVGMLITS MFR

Best Arabidopsis Sequence Match ( AT2G13650.3 )
(BLAST)

001: MKLYEHDGVD LEDGKTVKSG GDKPIPRKIH NRALLSGLAY CISSCSMILV NKFVLSSYNF NAGIFLMLYQ NFVSVIIVVG LSLMGLITTE PLTLRLMKVW
101: FPVNVIFVGM LITSMFSLKY INVAMVTVLK NVTNVITAVG EMYLFNKQHD NRVWAALFLM IISAVSGGIT DLSFNAVGYA WQIANCFLTA SYSLTLRKTM
201: DTAKQVTQSG NLNEFSMVLL NNTLSLPLGL LLSYFFNEMD YLYQTPLLRL PSFWMVMTLS GLLGLAISFT SMWFLHQTGA TTYSLVGSLN KIPLSIAGIV
301: LFNVPTSLQN SASILFGLVA GVVFARAKMR EKS

Arabidopsis Description

GONST1GDP-mannose transporter (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1B0VP09]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.