Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g074170.2.1 | |
| Solyc11g065020.1.1 | |
| Solyc11g068750.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G18205.1 | Solyc06g074170.2.1 | AT5G22290.1 | 21798944 |
| AT4G18205.1 | Solyc11g068750.1.1 | AT5G22290.1 | 21798944 |
| AT4G18220.1 | Solyc11g065020.1.1 | AT2G13650.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g071080.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid, vacuole | 61.6 | 92.77 |
| Solyc02g071090.2.1 | Tomato | plasma membrane | 88.27 | 88.27 |
| PGSC0003DMT400025118 | Potato | plasma membrane | 89.07 | 84.99 |
| VIT_10s0003g02850.t01 | Wine grape | plasma membrane | 43.2 | 43.78 |
| Solyc02g071110.2.1 | Tomato | plasma membrane | 42.93 | 42.48 |
| KRH45390 | Soybean | plasma membrane | 34.67 | 40.62 |
| Solyc01g088550.2.1 | Tomato | plasma membrane | 38.67 | 39.84 |
| Bra013292.1-P | Field mustard | plasma membrane | 39.47 | 37.95 |
| CDY08900 | Canola | plasma membrane | 31.47 | 37.94 |
| Solyc08g077380.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 38.13 | 37.93 |
| CDX78835 | Canola | plasma membrane | 39.47 | 37.85 |
| CDX99493 | Canola | plasma membrane | 39.47 | 37.76 |
| AT4G18210.1 | Thale cress | plasma membrane | 39.2 | 37.69 |
| CDX76537 | Canola | plasma membrane | 39.2 | 37.69 |
| Bra021018.1-P | Field mustard | plasma membrane | 40.0 | 37.69 |
| KRG98518 | Soybean | plasma membrane | 41.6 | 37.68 |
| AT4G18220.1 | Thale cress | plasma membrane | 38.93 | 37.44 |
| CDY08899 | Canola | cytosol, peroxisome, plasma membrane | 38.93 | 37.44 |
| CDY08897 | Canola | plasma membrane | 38.93 | 37.34 |
| Solyc02g071060.2.1 | Tomato | plasma membrane | 39.2 | 37.22 |
| Solyc08g077370.2.1 | Tomato | plasma membrane | 33.07 | 37.13 |
| Bra040924.1-P | Field mustard | plasma membrane | 38.67 | 37.08 |
| CDX90414 | Canola | plasma membrane | 36.8 | 36.8 |
| CDX76538 | Canola | plasma membrane | 38.4 | 36.73 |
| Bra013291.1-P | Field mustard | plasma membrane | 36.0 | 36.49 |
| AT4G18195.1 | Thale cress | plasma membrane | 38.13 | 36.29 |
| KRH46353 | Soybean | plasma membrane | 40.0 | 36.14 |
| AT4G18205.1 | Thale cress | plasma membrane | 36.27 | 36.07 |
| CDY08895 | Canola | plasma membrane | 37.87 | 35.95 |
| Bra040925.1-P | Field mustard | plasma membrane | 37.33 | 35.9 |
| CDX76536 | Canola | plasma membrane | 28.0 | 35.84 |
| CDX76540 | Canola | plasma membrane | 37.87 | 35.77 |
| CDY01525 | Canola | plasma membrane | 35.73 | 35.45 |
| VIT_10s0003g02840.t01 | Wine grape | plasma membrane | 40.8 | 34.69 |
| Solyc02g071050.2.1 | Tomato | plasma membrane | 35.73 | 34.63 |
| AT4G18197.1 | Thale cress | plasma membrane | 35.2 | 33.85 |
| Solyc03g005820.2.1 | Tomato | plasma membrane | 37.87 | 33.81 |
| Solyc12g057090.1.1 | Tomato | plasma membrane | 24.27 | 30.64 |
| Solyc03g005810.2.1 | Tomato | endoplasmic reticulum, extracellular, plastid | 19.47 | 29.8 |
| Solyc12g057100.1.1 | Tomato | cytosol, golgi, plasma membrane | 28.53 | 29.56 |
| Solyc06g035420.1.1 | Tomato | extracellular, plasma membrane | 24.0 | 27.36 |
| Solyc10g005160.1.1 | Tomato | plasma membrane | 25.07 | 26.33 |
| Solyc12g087870.1.1 | Tomato | plasma membrane | 24.53 | 25.84 |
| Solyc07g008440.2.1 | Tomato | plasma membrane | 25.07 | 25.61 |
| Solyc12g087880.1.1 | Tomato | extracellular, plasma membrane, vacuole | 11.47 | 25.29 |
| Solyc04g074870.2.1 | Tomato | extracellular, plasma membrane | 23.73 | 25.14 |
| Solyc10g005170.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 25.87 | 24.37 |
| Solyc10g005150.1.1 | Tomato | plasma membrane | 24.0 | 23.56 |
| Solyc02g082170.1.1 | Tomato | plasma membrane | 25.07 | 22.87 |
| Solyc07g005660.2.1 | Tomato | plasma membrane | 19.47 | 22.26 |
| Solyc04g074880.2.1 | Tomato | plasma membrane | 20.53 | 21.69 |
Protein Annotations
| EnsemblPlants:Solyc02g071100.2.1 | EnsemblPlantsGene:Solyc02g071100.2 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PUP_plant | PANTHER:PTHR31376 | PANTHER:PTHR31376:SF17 |
| PFAM:PF16913 | SEG:seg | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI0002768BF6 | UniProt:K4B886 |
| MapMan:24.2.1.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:40583040..40584966
Molecular Weight (calculated)
41772.3 Da
IEP (calculated)
6.633
GRAVY (calculated)
0.305
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAHEKLLH LTFEEAERTE SSENADNRKF QSSKFMLWLQ IFIFTFFVLG GQAVGTLLGR VYYEQGGKSR WLATLAQTAG FPILLPFICY PSPKNHNEDE
101: LTTHHPSIFV RASVYIFLGL FQVVNSMSFT VGVQYLPAST YSLISGTQLA FNAITSFFLN GHKITAIILN SVVLLSFSSS VVIFQNETGD SGEISQKSLL
201: IGFAVTTFGS LGYALQFSLT ELAFQKVFKS NTLKQVMKMS FFIGFFVTIA SLIGLFASGN WRDLEKEIGE YRTGKSSYFI NLICTAISWQ LYAVGSFGLV
301: SKASSLFSNV IINFGGSIVP IFAMVFLKDR ITGLKVFSLL LGLWGYASYI YQHYLDDLEA KNSEIKASDN QDDDF
101: LTTHHPSIFV RASVYIFLGL FQVVNSMSFT VGVQYLPAST YSLISGTQLA FNAITSFFLN GHKITAIILN SVVLLSFSSS VVIFQNETGD SGEISQKSLL
201: IGFAVTTFGS LGYALQFSLT ELAFQKVFKS NTLKQVMKMS FFIGFFVTIA SLIGLFASGN WRDLEKEIGE YRTGKSSYFI NLICTAISWQ LYAVGSFGLV
301: SKASSLFSNV IINFGGSIVP IFAMVFLKDR ITGLKVFSLL LGLWGYASYI YQHYLDDLEA KNSEIKASDN QDDDF
001: MAKEPVRVLV TGAAGNQEPI LVKEESVVGI PTPLLKLKSW QWWVLVSVNI FFLIGGQAAS VLLGRFYYDE GGNSKWMATL VQTAAFPILY IPLLLLPSSA
101: SVESSESSCS LKYIVLIYVL LGVIIAGDNM LYSVGLLYLS ASTYSLICAT QLAFNAVFSY FINAQKFTAL ILNSVVLLSF SAALIALNDD ADTPSGVSRS
201: KYIVGFVCTL AASALYSLLL SLMQFSFEKI LKRETFSVVL EMQIYTSLVA TCVSVIGLFA SGEWRTLHGE MEGYHKGQAS YVLTLVWTAV TWQVCSVGVV
301: GLIFLVTSLF SNVISTLSLA VTPLAALVVF RDKMSGVKIM AMLIAIWGFA SYVYQNHIDD LKVRQARQQA QAGRVEPPC
101: SVESSESSCS LKYIVLIYVL LGVIIAGDNM LYSVGLLYLS ASTYSLICAT QLAFNAVFSY FINAQKFTAL ILNSVVLLSF SAALIALNDD ADTPSGVSRS
201: KYIVGFVCTL AASALYSLLL SLMQFSFEKI LKRETFSVVL EMQIYTSLVA TCVSVIGLFA SGEWRTLHGE MEGYHKGQAS YVLTLVWTAV TWQVCSVGVV
301: GLIFLVTSLF SNVISTLSLA VTPLAALVVF RDKMSGVKIM AMLIAIWGFA SYVYQNHIDD LKVRQARQQA QAGRVEPPC
Arabidopsis Description
PUP11Probable purine permease 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPF6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.