Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G18220.1 | CDX95295 | AT2G13650.1 | 15299147 |
| AT4G18220.1 | CDY39936 | AT2G13650.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78835 | Canola | plasma membrane | 94.64 | 94.88 |
| CDX76537 | Canola | plasma membrane | 85.97 | 86.41 |
| CDY08899 | Canola | cytosol, peroxisome, plasma membrane | 85.46 | 85.9 |
| CDY08900 | Canola | plasma membrane | 67.6 | 85.21 |
| CDY08897 | Canola | plasma membrane | 84.69 | 84.91 |
| CDX76538 | Canola | plasma membrane | 83.16 | 83.16 |
| CDX76536 | Canola | plasma membrane | 61.73 | 82.59 |
| AT4G18210.1 | Thale cress | plasma membrane | 80.87 | 81.28 |
| AT4G18220.1 | Thale cress | plasma membrane | 80.36 | 80.77 |
| VIT_10s0003g02850.t01 | Wine grape | plasma membrane | 53.57 | 56.76 |
| KRH45390 | Soybean | plasma membrane | 44.64 | 54.69 |
| CDY01525 | Canola | plasma membrane | 50.51 | 52.38 |
| CDX90414 | Canola | plasma membrane | 49.49 | 51.73 |
| CDY08895 | Canola | plasma membrane | 51.53 | 51.14 |
| CDX76540 | Canola | plasma membrane | 51.53 | 50.88 |
| CDY36342 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 38.78 | 50.84 |
| KRH46353 | Soybean | plasma membrane | 53.32 | 50.36 |
| CDY12545 | Canola | plasma membrane | 38.01 | 50.0 |
| KRG98518 | Soybean | plasma membrane | 52.55 | 49.76 |
| Solyc02g071110.2.1 | Tomato | plasma membrane | 45.92 | 47.49 |
| VIT_10s0003g02840.t01 | Wine grape | plasma membrane | 53.06 | 47.17 |
| PGSC0003DMT400025116 | Potato | plasma membrane | 45.92 | 46.63 |
| PGSC0003DMT400035009 | Potato | endoplasmic reticulum, extracellular | 17.86 | 46.36 |
| Solyc02g071080.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid, vacuole | 28.06 | 44.18 |
| PGSC0003DMT400025123 | Potato | plasma membrane | 43.11 | 43.11 |
| Solyc02g071060.2.1 | Tomato | plasma membrane | 43.11 | 42.78 |
| PGSC0003DMT400025125 | Potato | plasma membrane | 41.84 | 41.84 |
| Solyc02g071050.2.1 | Tomato | plasma membrane | 40.56 | 41.09 |
| CDY14989 | Canola | plasma membrane | 43.11 | 40.72 |
| CDX71327 | Canola | plasma membrane | 42.86 | 40.38 |
| Solyc02g071090.2.1 | Tomato | plasma membrane | 38.27 | 40.0 |
| PGSC0003DMT400025122 | Potato | plasma membrane | 38.27 | 39.79 |
| Solyc02g071100.2.1 | Tomato | nucleus | 37.76 | 39.47 |
| Solyc03g005810.2.1 | Tomato | endoplasmic reticulum, extracellular, plastid | 24.49 | 39.18 |
| CDY54350 | Canola | plasma membrane | 33.16 | 39.16 |
| CDX75141 | Canola | plasma membrane | 32.4 | 38.25 |
| CDX78833 | Canola | cytosol, extracellular, plasma membrane | 46.68 | 38.05 |
| PGSC0003DMT400025118 | Potato | plasma membrane | 37.76 | 37.66 |
| PGSC0003DMT400035010 | Potato | endoplasmic reticulum, peroxisome, plasma membrane | 35.71 | 36.94 |
| CDX99494 | Canola | plasma membrane | 46.94 | 35.87 |
| Solyc03g005820.2.1 | Tomato | plasma membrane | 35.2 | 32.86 |
| CDY17197 | Canola | extracellular, plasma membrane | 29.08 | 32.48 |
| CDY15687 | Canola | plasma membrane | 24.49 | 31.68 |
| CDY27947 | Canola | plasma membrane | 28.06 | 31.52 |
| CDX90136 | Canola | plasma membrane | 28.06 | 31.25 |
| CDX94594 | Canola | extracellular, plasma membrane | 27.55 | 30.95 |
| CDY35722 | Canola | plasma membrane | 27.81 | 30.79 |
| CDX94595 | Canola | plasma membrane | 27.3 | 30.66 |
| CDY12422 | Canola | plasma membrane | 29.34 | 30.59 |
| CDY29741 | Canola | plasma membrane | 28.83 | 29.97 |
| CDY16284 | Canola | plasma membrane | 28.83 | 29.97 |
| CDY72169 | Canola | plasma membrane | 18.88 | 29.25 |
| CDY46618 | Canola | plasma membrane | 16.33 | 28.19 |
| CDY02338 | Canola | plasma membrane | 22.96 | 28.12 |
| CDY09527 | Canola | plasma membrane | 22.96 | 28.12 |
| CDY09533 | Canola | plasma membrane | 22.7 | 27.81 |
| CDY29401 | Canola | plasma membrane | 23.72 | 27.03 |
| CDY29404 | Canola | plasma membrane | 26.28 | 27.03 |
| CDY67986 | Canola | plasma membrane | 25.26 | 26.54 |
| CDY39353 | Canola | plasma membrane | 25.77 | 26.44 |
| CDX90135 | Canola | plasma membrane | 20.92 | 25.39 |
| CDY39352 | Canola | plasma membrane | 25.26 | 25.38 |
| CDY34789 | Canola | cytosol, peroxisome, plasma membrane | 24.23 | 25.07 |
| CDX76826 | Canola | cytosol, peroxisome, plasma membrane | 24.23 | 25.07 |
| CDY29403 | Canola | plasma membrane | 24.49 | 24.94 |
| CDY64442 | Canola | plasma membrane | 24.74 | 24.81 |
| CDY53149 | Canola | plasma membrane | 24.74 | 24.68 |
| CDX94937 | Canola | plasma membrane | 23.72 | 24.54 |
| CDY22619 | Canola | plasma membrane | 23.47 | 24.4 |
| CDY35721 | Canola | plasma membrane | 19.64 | 24.14 |
| CDX96651 | Canola | plasma membrane | 25.26 | 23.4 |
| CDX93469 | Canola | plasma membrane | 22.7 | 23.06 |
| CDY63252 | Canola | extracellular | 24.74 | 22.45 |
| CDY31805 | Canola | plasma membrane | 25.0 | 22.12 |
| CDX73177 | Canola | plasma membrane | 18.37 | 17.02 |
| CDY63702 | Canola | plasma membrane | 25.0 | 12.78 |
| CDX96650 | Canola | cytosol, plasma membrane, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX99493 | EnsemblPlantsGene:GSBRNA2T00107860001 | GO:A0A078EJK5 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PUP_plant | PANTHER:PTHR31376 |
| PANTHER:PTHR31376:SF17 | PFAM:PF16913 | ProteinID:CDX99493 | ProteinID:CDX99493.1 | SEG:seg | SUPFAM:SSF103481 |
| TMHMM:TMhelix | UniParc:UPI0004EDECF5 | MapMan:24.2.1.6 | : | : | : |
Description
BnaC01g10590D
Coordinates
chrLK031910:-:1239602..1240965
Molecular Weight (calculated)
43490.9 Da
IEP (calculated)
8.731
GRAVY (calculated)
0.298
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGDQELQVI VQQGKEPNTT VQEERNQTGV THSNTYKRWL RVAVYTFFVI SGQSVATILG RIYYDNGGNS KWLATVVQLV GFPVLLPYYL LSIKTHTTTT
101: HRDDGKAASL KNRVLVYVVL GVLVGADCYL YSIGLLYLPV STYSLICASQ LAFNAFFSYF LNSQKLTPII LNSLLLLTIS STLLAFNNED SNSQKVTKAQ
201: YVTSFLCTIG ASAGFGLVLS LQQLAFRRVL KRQTFTEVMD MIIYMSLVAS CVSLVGLFAS SEWKTLSSEM DNYKLGKVSY VMNLVWTAIT WQVFNIGGTG
301: LIFELSSLFS NAISVLGLPV VPIMAVIIFH DKMNGLKVIS MILAIWGFMS YVYQHYLDDK NLKRSVGIQR VESSDTTEAE GPNGQKIETS AS
101: HRDDGKAASL KNRVLVYVVL GVLVGADCYL YSIGLLYLPV STYSLICASQ LAFNAFFSYF LNSQKLTPII LNSLLLLTIS STLLAFNNED SNSQKVTKAQ
201: YVTSFLCTIG ASAGFGLVLS LQQLAFRRVL KRQTFTEVMD MIIYMSLVAS CVSLVGLFAS SEWKTLSSEM DNYKLGKVSY VMNLVWTAIT WQVFNIGGTG
301: LIFELSSLFS NAISVLGLPV VPIMAVIIFH DKMNGLKVIS MILAIWGFMS YVYQHYLDDK NLKRSVGIQR VESSDTTEAE GPNGQKIETS AS
001: MEITQVIYVN DHNNIEANLT GQEEMNTTME IESSSVPQSK NYKKWLRISI YVFFVLACQA LSTILGRVYY ENGGKSTWMG TLVQLIGFPV LFLFRFFSQT
101: KNPKPTEADF RKFSSFTILG SVYIVTGLLV SANSYMSSVG LLYLPVSTFS LILASQLAFT AFFSYFLNSQ KFTPFIVNSL FLLTISSALL VVNTDSENTA
201: KVSRVKYVIG IICTIGASAG IGLLLSLVQL ILRKVLKKQT FSTVTDLVAY QSLVASCVVL IGLFASGEWK TLTSEMENYK LGKVPYVMTL ASIAISWQVY
301: TIGVVGLIFE SSSVFSNSIT AVGLPIVPVV AVIVFHDKMN ASKIFSIILA IWGFISFVYQ HYLDEKKLKT SHTSPVGDPH LLPAEEGHTN IHSV
101: KNPKPTEADF RKFSSFTILG SVYIVTGLLV SANSYMSSVG LLYLPVSTFS LILASQLAFT AFFSYFLNSQ KFTPFIVNSL FLLTISSALL VVNTDSENTA
201: KVSRVKYVIG IICTIGASAG IGLLLSLVQL ILRKVLKKQT FSTVTDLVAY QSLVASCVVL IGLFASGEWK TLTSEMENYK LGKVPYVMTL ASIAISWQVY
301: TIGVVGLIFE SSSVFSNSIT AVGLPIVPVV AVIVFHDKMN ASKIFSIILA IWGFISFVYQ HYLDEKKLKT SHTSPVGDPH LLPAEEGHTN IHSV
Arabidopsis Description
PUP8Probable purine permease 8 [Source:UniProtKB/Swiss-Prot;Acc:Q0WRB9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.