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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX95295
CDY39936

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18220.1 CDX95295 AT2G13650.1 15299147
AT4G18220.1 CDY39936 AT2G13650.1 15299147
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra040924.1-P Field mustard plasma membrane 94.37 94.37
CDX76538 Canola plasma membrane 93.86 93.62
CDY08899 Canola cytosol, peroxisome, plasma membrane 88.49 88.72
CDX76537 Canola plasma membrane 88.49 88.72
CDY08900 Canola plasma membrane 69.82 87.78
CDX99493 Canola plasma membrane 84.91 84.69
CDX76536 Canola plasma membrane 62.4 83.28
CDX78835 Canola plasma membrane 82.61 82.61
AT4G18210.1 Thale cress plasma membrane 79.54 79.74
AT4G18220.1 Thale cress plasma membrane 78.77 78.97
VIT_10s0003g02850.t01 Wine grape plasma membrane 53.45 56.49
KRH45390 Soybean plasma membrane 43.99 53.75
CDY01525 Canola plasma membrane 51.41 53.17
CDX90414 Canola plasma membrane 50.38 52.53
CDY36342 Canola endoplasmic reticulum, plasma membrane, vacuole 39.39 51.51
CDY08895 Canola plasma membrane 51.66 51.14
CDX76540 Canola plasma membrane 51.92 51.13
CDY12545 Canola plasma membrane 37.85 49.66
KRH46353 Soybean plasma membrane 52.43 49.4
KRG98518 Soybean plasma membrane 51.92 49.03
VIT_10s0003g02840.t01 Wine grape plasma membrane 53.2 47.17
Solyc02g071110.2.1 Tomato plasma membrane 45.52 46.97
PGSC0003DMT400025116 Potato plasma membrane 46.04 46.63
PGSC0003DMT400035009 Potato endoplasmic reticulum, extracellular 17.39 45.03
PGSC0003DMT400025123 Potato plasma membrane 43.22 43.11
Solyc02g071060.2.1 Tomato plasma membrane 43.48 43.04
Solyc02g071080.1.1 Tomato endoplasmic reticulum, plasma membrane, plastid, vacuole 27.37 42.97
CDY14989 Canola plasma membrane 43.73 41.2
PGSC0003DMT400025125 Potato plasma membrane 41.18 41.07
CDX71327 Canola plasma membrane 43.48 40.87
Solyc02g071050.2.1 Tomato plasma membrane 39.9 40.31
Solyc02g071090.2.1 Tomato plasma membrane 37.85 39.47
CDY54350 Canola plasma membrane 33.25 39.16
PGSC0003DMT400025122 Potato plasma membrane 37.6 38.99
Solyc02g071100.2.1 Tomato nucleus 37.34 38.93
CDX78833 Canola cytosol, extracellular, plasma membrane 47.57 38.67
Solyc03g005810.2.1 Tomato endoplasmic reticulum, extracellular, plastid 24.04 38.37
CDX75141 Canola plasma membrane 31.97 37.65
PGSC0003DMT400025118 Potato plasma membrane 37.08 36.9
CDX99494 Canola plasma membrane 47.83 36.45
PGSC0003DMT400035010 Potato endoplasmic reticulum, peroxisome, plasma membrane 35.04 36.15
CDY17197 Canola extracellular, plasma membrane 29.41 32.76
Solyc03g005820.2.1 Tomato plasma membrane 35.04 32.62
CDX90136 Canola plasma membrane 29.16 32.39
CDX94594 Canola extracellular, plasma membrane 28.9 32.38
CDY15687 Canola plasma membrane 25.06 32.34
CDX94595 Canola plasma membrane 28.64 32.09
CDY35722 Canola plasma membrane 28.9 31.92
CDY27947 Canola plasma membrane 28.39 31.81
CDY12422 Canola plasma membrane 29.67 30.85
CDY16284 Canola plasma membrane 29.41 30.5
CDY29741 Canola plasma membrane 29.16 30.24
CDY72169 Canola plasma membrane 18.16 28.06
CDY29404 Canola plasma membrane 26.85 27.56
CDY29401 Canola plasma membrane 24.04 27.33
CDY39353 Canola plasma membrane 26.6 27.23
CDY67986 Canola plasma membrane 25.58 26.81
CDY34789 Canola cytosol, peroxisome, plasma membrane 25.83 26.65
CDX76826 Canola cytosol, peroxisome, plasma membrane 25.83 26.65
CDY46618 Canola plasma membrane 15.35 26.43
CDY39352 Canola plasma membrane 25.32 25.38
CDY29403 Canola plasma membrane 24.81 25.19
CDY02338 Canola plasma membrane 20.46 25.0
CDY09527 Canola plasma membrane 20.46 25.0
CDX90135 Canola plasma membrane 20.46 24.77
CDY09533 Canola plasma membrane 20.2 24.69
CDX96651 Canola plasma membrane 26.34 24.35
CDY53149 Canola plasma membrane 24.04 23.92
CDY64442 Canola plasma membrane 23.79 23.79
CDY35721 Canola plasma membrane 19.18 23.51
CDX94937 Canola plasma membrane 22.25 22.96
CDY22619 Canola plasma membrane 21.99 22.81
CDX93469 Canola plasma membrane 21.99 22.28
CDY63252 Canola extracellular 23.79 21.53
CDY31805 Canola plasma membrane 24.3 21.44
CDX73177 Canola plasma membrane 18.93 17.49
CDY63702 Canola plasma membrane 25.83 13.17
CDX96650 Canola cytosol, plasma membrane, vacuole 0.26 0.64
Protein Annotations
MapMan:24.2.1.6GO:A0A078F727UniProt:A0A078F727EnsemblPlants:CDY08897ProteinID:CDY08897ProteinID:CDY08897.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00000903001PFAM:PF16913PANTHER:PTHR31376PANTHER:PTHR31376:SF17InterPro:PUP_plant
SUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI0004EF230ESEG:seg::
Description
BnaC08g11270DBnaC08g11270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F727]
Coordinates
chrLK031990:+:343606..345288
Molecular Weight (calculated)
43156.5 Da
IEP (calculated)
8.921
GRAVY (calculated)
0.305
Length
391 amino acids
Sequence
(BLAST)
001: MKSDQELQVI VQQGKEPNPT VEEEKNQTGV SHSNTYKRWL LVSVYTLFVI SGQSVATILG RLYYDNGGNS KWLATVVQLV GFPVLLPYYL FSIKTHTSTH
101: RDDGKPASPR NRVLVYIALG VLVGGDCYLY SIGLLYLPVS TFSLICASQL AFNAFFSYFL NSQKLTPIIL NSLLLLTISS TLLAFNNEES NFRKVTRGQY
201: ITSFICTIGA SAGYGLSLSL QQLAFSKVLK RQTFSEVMDL IIYVSLVASC VSVVGLFASG EWETLSSEMD SYKLGKVSYV MNLVWTAVTW QVFNIGSTWL
301: IFEISSLFSN AIGVLGLPVV PVLAVIIFHD KMNGLKVISM ILAIWGFMSY VYQHYLDDKN LKKSLGMPTT GSSDSPEAKG SSGQKIRTPA S
Best Arabidopsis Sequence Match ( AT4G18220.1 )
(BLAST)
001: MKGDQEVQVI VQQGKEPIPT DQDERSSVSG SQTKLSHSNT YKRWLRVAIY TFFVISGQSV ATILGRLYYE NGGNSKWLAT VVQLVGFPIL LPYHLLSVKT
101: HTTTQRDGKL TSLRNRALVY IVLGLLVGAA CYLYSIGLLY LPVSTLSLIC ASQLAFTAFF SYLLNSQKLT PIILNSLFLL TISSTLLAFN NEESDSKKVT
201: KGEYVKGFVC TVGASAGFGL LLSLQQLAFR KVLKKQTFSE VINMIIYMSL VASCVSVVGL FASSEWKTLS SEMENYKLGK VSYVMNLVWT AVTWQVFSIG
301: CTGLIFELSS LFSNAISALG LPVVPILAVI IFHDKMNGLK VISMILAIWG FVSYVYQQYL DETNLKKSNE IPTTESPDRP EAEGSSEQSK
Arabidopsis Description
PUP21Purine permease 21 [Source:UniProtKB/Swiss-Prot;Acc:O49726]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.