CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 2
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane, plastid
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96650	Canola	cytosol, plasma membrane, vacuole	20.34	99.36
CDX96651	Canola	plasma membrane	49.02	88.89
CDY29404	Canola	plasma membrane	43.68	87.93
CDY39353	Canola	plasma membrane	43.42	87.17
AT1G19770.1	Thale cress	plasma membrane	42.5	82.95
CDY29403	Canola	plasma membrane	38.98	77.66
CDY39352	Canola	plasma membrane	39.37	77.44
CDY67986	Canola	plasma membrane	33.51	68.9
CDY29401	Canola	plasma membrane	30.77	68.6
CDX73177	Canola	plasma membrane	23.21	42.08
CDX94937	Canola	plasma membrane	16.95	34.3
CDY53149	Canola	plasma membrane	17.34	33.84
CDX93469	Canola	plasma membrane	16.82	33.42
CDY22619	Canola	plasma membrane	15.91	32.36
CDY64442	Canola	plasma membrane	15.65	30.69
CDY31805	Canola	plasma membrane	17.47	30.25
CDY12545	Canola	plasma membrane	11.34	29.19
CDX75141	Canola	plasma membrane	12.52	28.92
CDY54350	Canola	plasma membrane	12.52	28.92
CDY63252	Canola	extracellular	16.04	28.47
CDY36342	Canola	endoplasmic reticulum, plasma membrane, vacuole	11.08	28.43
CDX90414	Canola	plasma membrane	12.91	26.4
CDY01525	Canola	plasma membrane	12.91	26.19
CDY08897	Canola	plasma membrane	13.17	25.83
CDX76538	Canola	plasma membrane	13.04	25.51
CDY08899	Canola	cytosol, peroxisome, plasma membrane	12.78	25.13
CDX76537	Canola	plasma membrane	12.78	25.13
CDX99493	Canola	plasma membrane	12.78	25.0
CDX90136	Canola	plasma membrane	11.47	25.0
CDY08895	Canola	plasma membrane	12.65	24.56
CDX78835	Canola	plasma membrane	12.52	24.55
CDX76540	Canola	plasma membrane	12.65	24.43
CDY35722	Canola	plasma membrane	11.21	24.29
CDX94595	Canola	plasma membrane	10.95	24.07
CDX94594	Canola	extracellular, plasma membrane	10.95	24.07
CDY15687	Canola	plasma membrane	9.39	23.76
CDX76536	Canola	plasma membrane	9.0	23.55
CDY14989	Canola	plasma membrane	12.65	23.37
CDY08900	Canola	plasma membrane	9.39	23.15
CDX71327	Canola	plasma membrane	12.52	23.08
CDX90135	Canola	plasma membrane	9.65	22.91
CDY46618	Canola	plasma membrane	6.65	22.47
CDY27947	Canola	plasma membrane	10.17	22.35
CDY17197	Canola	extracellular, plasma membrane	10.17	22.22
CDY35721	Canola	plasma membrane	9.0	21.63
CDX78833	Canola	cytosol, extracellular, plasma membrane	13.3	21.21
CDY29741	Canola	plasma membrane	10.3	20.95
CDY72169	Canola	plasma membrane	6.78	20.55
CDY12422	Canola	plasma membrane	10.04	20.48
CDY16284	Canola	plasma membrane	9.91	20.16
CDX99494	Canola	plasma membrane	13.04	19.49
CDX76826	Canola	cytosol, peroxisome, plasma membrane	9.39	19.0
CDY34789	Canola	cytosol, peroxisome, plasma membrane	9.26	18.73
CDY09533	Canola	plasma membrane	7.56	18.12
CDY09527	Canola	plasma membrane	7.56	18.12
CDY02338	Canola	plasma membrane	7.56	18.12

Protein Annotations

MapMan:24.2.1.6	MapMan:5.8.2.2.1	GO:A0A078JBW9	UniProt:A0A078JBW9	InterPro:ABC_MlaE_Proteobac	EnsemblPlants:CDY63702
ProteinID:CDY63702	ProteinID:CDY63702.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0043190	EnsemblPlantsGene:GSBRNA2T00039556001
PFAM:PF02405	PFAM:PF16913	PANTHER:PTHR30188	PANTHER:PTHR30188:SF2	InterPro:Permease_MalE	TIGRFAMs:TIGR00056
TMHMM:TMhelix	UniParc:UPI0004EDCFAF	SEG:seg	:	:	:

Description

BnaC08g19190DBnaC08g19190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBW9]

Coordinates

chrLK034339:+:24483..27783

Molecular Weight (calculated)

84423.9 Da

IEP (calculated)

8.331

GRAVY (calculated)

0.320

Length

767 amino acids

Sequence
(BLAST)

001: MAQNQPIFQT KPQEHFVQIP INIERDSTTL INQTGNSNRR PNHWPTILLS TILVILGQSV AKLLENFYYD QINRSEYDES RQNDGVWTQA LLQTVGFPLL
101: LLPFIILTAK NRRNQPCDQL HYKSLTVIYI CIGIVMTVQA RLSAMGKLEI PFGVFTLIYT TQLFFTPILA RLVNKIKFNR WVVISLALAI ATGALTLSSA
201: FGGEPDEAEE NYARGSWAAL FAGVCFSLLL CNIQNVFDNY IFKRTESSTT RKPSFASVFE VIIFSSLAAT IISVAGLLIA GEQDDLKREM NEFSKGKGAY
301: VMAMVGQAVS WQVYWVGIVG LVFSVSSVLS NVISVVTWPI VSVLVVIFFN FMDDEFDVFK GVALITAVLS AAAYFFRLHK ENRDNDRALD ESSEAAKLLP
401: STLLGFYSER KFVSNLSRST MMQTCCIHQS LPFPQRILPR HDASIGFKPP KLGFIGKNQP LGILNLIRQR RLYVNLNAND AHPSMSILEE ETSSENSAPT
501: PEAELPFSEW SPSKSIWRGL SVPIIAGQVL LRILKGKIHW RNTLQQLERT GPKSLGVCLL TSTFVGMAFT IQFVREFTRL GLNRSIGGVL ALAFSRELSP
601: VITSIVVAGR MGSAFAAELG TMQVSEQTDT LRVLGADPID YLITPRVIAS CLALPFLTLM CFTVGMASSA LLSDAVYGIS INIIMDSAHR ALRPWDIVSA
701: MIKSQVFGAI ISVISCSWGV TTTGGAKGVG ESTTSAVVMS LVGIFIADFV LSSFFFQGAG DSLKNCV

Best Arabidopsis Sequence Match ( AT1G19800.4 )
(BLAST)

001: MMQTCCIHQS FCFPHRVFPR FDASIGIKPP KLCQVGFIGK TQSYGISSPI RQRRLYVNLN ANDGHPSMSM LEEETSTENN APSQEAELPF SKWSPSKYIW
101: RGLSVPIIAG QVVLRILKGK IHWRNTLQQL ERTGPKSLGV CLLTSTFVGM AFTIQFVREF TRLGLNRSIG GVLALAFSRE LSPVITSIVV AGRMGSAFAA
201: ELGTMQVSEQ TDTLRVLGAD PIDYLITPRV IASCLALPFL TLMCFTVGMA SSALLSDAVY GISINIIMDS AHRALRPWDI VSAMIKSQVF GAIISVISCS
301: WGVTTTGGAK GVGESTTSAV VMSLVGIFIA DFVLSSFFFQ GAGDSLKNCV

Arabidopsis Description

TGD1Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L4R0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.