CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, plasma membrane, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63702	Canola	plasma membrane	99.36	20.34
CDX73177	Canola	plasma membrane	8.92	3.31
CDX96651	Canola	plasma membrane	5.1	1.89
CDY64442	Canola	plasma membrane	1.91	0.77
CDY63252	Canola	extracellular	1.91	0.69
CDY35721	Canola	plasma membrane	1.27	0.63
CDY02338	Canola	plasma membrane	1.27	0.62
CDX90135	Canola	plasma membrane	1.27	0.62
CDY29741	Canola	plasma membrane	1.27	0.53
CDX94937	Canola	plasma membrane	1.27	0.53
CDY29404	Canola	plasma membrane	1.27	0.52
CDY39353	Canola	plasma membrane	1.27	0.52
CDX93469	Canola	plasma membrane	1.27	0.52
CDY39352	Canola	plasma membrane	1.27	0.51
CDY08895	Canola	plasma membrane	1.27	0.51
CDX76540	Canola	plasma membrane	1.27	0.5
CDY46618	Canola	plasma membrane	0.64	0.44
CDY08900	Canola	plasma membrane	0.64	0.32
CDY09527	Canola	plasma membrane	0.64	0.31
CDY09533	Canola	plasma membrane	0.64	0.31
CDY29401	Canola	plasma membrane	0.64	0.29
CDY27947	Canola	plasma membrane	0.64	0.29
CDY17197	Canola	extracellular, plasma membrane	0.64	0.28
CDX90136	Canola	plasma membrane	0.64	0.28
CDY35722	Canola	plasma membrane	0.64	0.28
CDY67986	Canola	plasma membrane	0.64	0.27
CDX90414	Canola	plasma membrane	0.64	0.27
CDY12422	Canola	plasma membrane	0.64	0.27
CDY16284	Canola	plasma membrane	0.64	0.27
CDY22619	Canola	plasma membrane	0.64	0.27
CDY01525	Canola	plasma membrane	0.64	0.26
CDY29403	Canola	plasma membrane	0.64	0.26
CDY08897	Canola	plasma membrane	0.64	0.26
CDX76538	Canola	plasma membrane	0.64	0.26
CDX78833	Canola	cytosol, extracellular, plasma membrane	0.64	0.21
CDY36342	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.0	0.0
Os04t0587500-01	Rice	cytosol, peroxisome	0.0	0.0
CDY53149	Canola	plasma membrane	0.0	0.0
CDY54350	Canola	plasma membrane	0.0	0.0
CDX71327	Canola	plasma membrane	0.0	0.0
Os04t0587400-01	Rice	plasma membrane	0.0	0.0
Os04t0587300-01	Rice	peroxisome	0.0	0.0
CDY72169	Canola	plasma membrane	0.0	0.0
CDY34789	Canola	cytosol, peroxisome, plasma membrane	0.0	0.0
CDY31805	Canola	plasma membrane	0.0	0.0
CDY15687	Canola	plasma membrane	0.0	0.0
CDY14989	Canola	plasma membrane	0.0	0.0
CDY12545	Canola	plasma membrane	0.0	0.0
CDY08899	Canola	cytosol, peroxisome, plasma membrane	0.0	0.0
CDX99494	Canola	plasma membrane	0.0	0.0
CDX99493	Canola	plasma membrane	0.0	0.0
CDX94595	Canola	plasma membrane	0.0	0.0
CDX94594	Canola	extracellular, plasma membrane	0.0	0.0
CDX78835	Canola	plasma membrane	0.0	0.0
CDX76826	Canola	cytosol, peroxisome, plasma membrane	0.0	0.0
CDX76537	Canola	plasma membrane	0.0	0.0
CDX76536	Canola	plasma membrane	0.0	0.0
CDX75141	Canola	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDX96650	EnsemblPlantsGene:GSBRNA2T00102855001	GO:A0A078E3V3	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0043190	InterPro:Permease_MalE	PANTHER:PTHR30188
PANTHER:PTHR30188:SF2	PFAM:PF02405	ProteinID:CDX96650	ProteinID:CDX96650.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EF15F8	MapMan:5.8.2.2.1	:	:	:	:

Description

BnaA08g21930D

Coordinates

chrLK031895:-:431991..432464

Molecular Weight (calculated)

16413.1 Da

IEP (calculated)

4.633

GRAVY (calculated)

0.786

Length

157 amino acids

Sequence
(BLAST)

001: MGSAFAAELG TMQVSEQTDT LRVLGADPID YLITPRVIAS CLALPFLTLM CFTVGMASSA LLSDAVYGIS INIIMDSAHR ALRPWDIVSA MIKSQVFGAI
101: ISVISCSWGV TTKGGAKGVG ESTTSAVVMS LVGIFIADFV LSSFFFQGAG DSLKNCV

Best Arabidopsis Sequence Match ( AT1G19800.4 )
(BLAST)

001: MMQTCCIHQS FCFPHRVFPR FDASIGIKPP KLCQVGFIGK TQSYGISSPI RQRRLYVNLN ANDGHPSMSM LEEETSTENN APSQEAELPF SKWSPSKYIW
101: RGLSVPIIAG QVVLRILKGK IHWRNTLQQL ERTGPKSLGV CLLTSTFVGM AFTIQFVREF TRLGLNRSIG GVLALAFSRE LSPVITSIVV AGRMGSAFAA
201: ELGTMQVSEQ TDTLRVLGAD PIDYLITPRV IASCLALPFL TLMCFTVGMA SSALLSDAVY GISINIIMDS AHRALRPWDI VSAMIKSQVF GAIISVISCS
301: WGVTTTGGAK GVGESTTSAV VMSLVGIFIA DFVLSSFFFQ GAGDSLKNCV

Arabidopsis Description

TGD1Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L4R0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.