CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025764.1-P	Field mustard	plasma membrane	98.69	98.69
CDY39353	Canola	plasma membrane	95.01	94.76
AT1G19770.1	Thale cress	plasma membrane	85.04	82.44
CDY29403	Canola	plasma membrane	82.41	81.56
CDY39352	Canola	plasma membrane	83.2	81.28
CDX96651	Canola	plasma membrane	85.83	77.31
CDY29401	Canola	plasma membrane	62.2	68.9
CDY67986	Canola	plasma membrane	66.93	68.36
CDY63702	Canola	plasma membrane	87.93	43.68
CDX73177	Canola	plasma membrane	43.83	39.48
CDX94937	Canola	plasma membrane	34.65	34.83
CDX93469	Canola	plasma membrane	34.12	33.68
CDY53149	Canola	plasma membrane	34.65	33.59
CDY22619	Canola	plasma membrane	32.81	33.16
CDY12545	Canola	plasma membrane	23.62	30.2
CDY64442	Canola	plasma membrane	30.97	30.18
CDY31805	Canola	plasma membrane	34.91	30.02
CDY54350	Canola	plasma membrane	25.72	29.52
CDX75141	Canola	plasma membrane	25.72	29.52
CDY36342	Canola	endoplasmic reticulum, plasma membrane, vacuole	23.1	29.43
CDY63252	Canola	extracellular	31.76	28.01
CDY01525	Canola	plasma membrane	27.56	27.78
CDX90414	Canola	plasma membrane	27.3	27.73
CDY08897	Canola	plasma membrane	27.56	26.85
CDY08899	Canola	cytosol, peroxisome, plasma membrane	27.3	26.67
CDX76537	Canola	plasma membrane	27.3	26.67
CDX76538	Canola	plasma membrane	27.3	26.53
CDX99493	Canola	plasma membrane	27.03	26.28
CDX76536	Canola	plasma membrane	19.68	25.6
CDX78835	Canola	plasma membrane	26.25	25.58
CDY08895	Canola	plasma membrane	26.51	25.57
CDX76540	Canola	plasma membrane	26.51	25.44
CDX90136	Canola	plasma membrane	23.36	25.28
CDY08900	Canola	plasma membrane	20.21	24.76
CDY35722	Canola	plasma membrane	22.83	24.58
CDY14989	Canola	plasma membrane	26.51	24.34
CDX71327	Canola	plasma membrane	26.25	24.04
CDX94594	Canola	extracellular, plasma membrane	21.52	23.5
CDX90135	Canola	plasma membrane	19.68	23.22
CDX94595	Canola	plasma membrane	21.26	23.21
CDY15687	Canola	plasma membrane	18.37	23.1
CDY27947	Canola	plasma membrane	20.21	22.06
CDY17197	Canola	extracellular, plasma membrane	20.21	21.94
CDY35721	Canola	plasma membrane	18.11	21.63
CDX78833	Canola	cytosol, extracellular, plasma membrane	27.03	21.41
CDY46618	Canola	plasma membrane	12.6	21.15
CDY12422	Canola	plasma membrane	20.47	20.74
CDY29741	Canola	plasma membrane	20.47	20.69
CDY72169	Canola	plasma membrane	13.65	20.55
CDY16284	Canola	plasma membrane	20.21	20.42
CDX99494	Canola	plasma membrane	26.51	19.69
CDX76826	Canola	cytosol, peroxisome, plasma membrane	18.37	18.47
CDY34789	Canola	cytosol, peroxisome, plasma membrane	18.11	18.21
CDY09527	Canola	plasma membrane	14.17	16.88
CDY09533	Canola	plasma membrane	14.17	16.88
CDY02338	Canola	plasma membrane	13.91	16.56
CDX96650	Canola	cytosol, plasma membrane, vacuole	0.52	1.27

Protein Annotations

EnsemblPlants:CDY29404	EnsemblPlantsGene:GSBRNA2T00042998001	GO:A0A078GW54	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:PUP_plant	PANTHER:PTHR31376
PANTHER:PTHR31376:SF34	PFAM:PF16913	ProteinID:CDY29404	ProteinID:CDY29404.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EDB008	UniProt:A0A078GW54	MapMan:24.2.1.6	:	:	:

Description

BnaA06g13920DBnaA06g13920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW54]

Coordinates

chrLK032236:-:362725..364203

Molecular Weight (calculated)

42826.2 Da

IEP (calculated)

8.417

GRAVY (calculated)

0.393

Length

381 amino acids

Sequence
(BLAST)

001: MAQNQPIFQT EEHFVQIPVS IERDSTTLIN SNRKPNHWPT ILLSTVFVII GQSIAKLLEN FYYDKINRSE YNEHRQNDGV WTQALLQTVG FPLLLLPFII
101: LTTKKHNQPS SDNQFHYKSL AVIYICIGIV MSVQGRLSAM GKLEIPFGIF TLIYTTQLFF TPIFASFVNK TKFNRWVVIS LLLAIVTGAL TLSSSFGGEP
201: DEAELNYARG SWAALFAALC FSLLLCNIQN VFDSYIFKRT ESTTRKPSFA SVFEVIIFSS LVATLISMVG LFVAGEQHDL KREMNGFPKG KGAYVMAMVG
301: QAVSWQIYWV GIVGLVFSVS SVLSNVISVV TWPIVSVLVV IFFNYMDDEF DVFKGVALIT AVLSAAAYFF RLHKENRNSA Y

Best Arabidopsis Sequence Match ( AT1G19770.1 )
(BLAST)

001: MAQNQQPIFQ TKPPEQFVQI PINIERDSST TRMNQTGNTI RKPNHWPTIT ISIIFVIIGQ SIAKLLENFY YDKTNRSEYN ENRQNDGVWT QSLLQTVGFP
101: LLLLPFLIFI TKNKRNHHQQ PPITSDSIHL KSLAVIYICI GIIMSVQGRL AAMGKLEIPF GVFTLIYTAQ LFFTPIFAAF INKIKFNRWV VISVILAIIT
201: GALTLSSSFG GEPDEAEENY ARGSWAALFA GICFALLLCN IQNVFDSYIF KRTESTNQKP SFASVFEVII FSSLVATIIS VVGLLIAGEQ HDLKREMNGF
301: SKGKGSYVMA MVGQAVSWQV YWVGIVGLVY SVSSVLSNVI SVITWPIVSV LVVIFFNFMD DEFDAFKGVA LVTAVLSAAA YFFRLHKDNR MAY

Arabidopsis Description

PUP14PUP14 [Source:UniProtKB/TrEMBL;Acc:A0A178WHV5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.