Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30840.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT1G30840.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g005160.1.1 | Tomato | plasma membrane | 73.62 | 82.07 |
| PGSC0003DMT400090938 | Potato | endoplasmic reticulum, extracellular | 31.41 | 78.62 |
| Solyc10g005150.1.1 | Tomato | plasma membrane | 70.35 | 73.3 |
| VIT_18s0089g01410.t01 | Wine grape | plasma membrane | 57.04 | 65.99 |
| Solyc02g082170.1.1 | Tomato | plasma membrane | 60.8 | 58.88 |
| CDY02338 | Canola | plasma membrane | 45.73 | 56.88 |
| Bra023141.1-P | Field mustard | plasma membrane | 55.78 | 56.78 |
| Bra023144.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 55.78 | 56.78 |
| AT1G30840.1 | Thale cress | peroxisome, plasma membrane, vacuole | 54.27 | 56.54 |
| CDY09533 | Canola | plasma membrane | 44.22 | 55.0 |
| CDY09527 | Canola | plasma membrane | 44.22 | 55.0 |
| KRH37148 | Soybean | cytosol, peroxisome, plasma membrane | 55.28 | 54.86 |
| KRH12149 | Soybean | plasma membrane | 55.53 | 54.7 |
| KRH37147 | Soybean | nucleus, peroxisome, plasma membrane | 55.78 | 54.28 |
| KRH12150 | Soybean | plasma membrane | 48.24 | 53.63 |
| KRH37149 | Soybean | plasma membrane | 54.77 | 53.56 |
| GSMUA_Achr6P30590_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 44.97 | 52.03 |
| GSMUA_Achr3P16440_001 | Banana | extracellular, peroxisome, plastid | 45.73 | 48.15 |
| GSMUA_Achr9P06170_001 | Banana | cytosol | 45.48 | 48.14 |
| TraesCS3B01G300900.1 | Wheat | plastid | 43.47 | 45.53 |
| EES18657 | Sorghum | mitochondrion | 39.2 | 45.22 |
| TraesCS3A01G267500.1 | Wheat | plastid | 43.47 | 45.17 |
| TraesCS3D01G267700.1 | Wheat | plastid | 43.22 | 44.91 |
| Zm00001d038965_P001 | Maize | mitochondrion, plastid | 40.7 | 44.26 |
| Zm00001d011603_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid, vacuole | 42.21 | 43.64 |
| Zm00001d043858_P001 | Maize | vacuole | 43.22 | 43.43 |
| EES01264 | Sorghum | plasma membrane | 41.96 | 43.15 |
| OQU78406 | Sorghum | plastid | 39.95 | 43.09 |
| HORVU3Hr1G062690.1 | Barley | plastid | 43.22 | 43.0 |
| Os01t0680200-01 | Rice | cytosol, plasma membrane, vacuole | 41.46 | 42.64 |
| GSMUA_Achr8P27440_001 | Banana | mitochondrion | 44.97 | 42.32 |
| Os01t0504100-01 | Rice | plasma membrane | 40.2 | 42.22 |
| Os05t0556800-01 | Rice | mitochondrion | 39.95 | 41.51 |
| TraesCS1A01G386000.1 | Wheat | plastid | 38.69 | 40.96 |
| TraesCS1B01G413400.1 | Wheat | plastid | 38.69 | 40.63 |
| HORVU1Hr1G085140.1 | Barley | endoplasmic reticulum | 38.44 | 40.48 |
| TraesCS1D01G394000.1 | Wheat | plastid | 38.19 | 40.11 |
| TraesCS1D01G393900.1 | Wheat | plastid | 39.7 | 40.1 |
| HORVU1Hr1G085120.1 | Barley | plastid | 39.45 | 39.25 |
| TraesCS1A01G385800.1 | Wheat | plastid | 39.7 | 39.11 |
| TraesCS1B01G413500.1 | Wheat | plastid | 39.45 | 38.86 |
| TraesCS1A01G386100.1 | Wheat | plastid | 39.2 | 38.61 |
| TraesCS1D01G394100.1 | Wheat | plastid | 38.94 | 38.37 |
| TraesCS1B01G413300.1 | Wheat | mitochondrion | 40.2 | 37.91 |
| HORVU1Hr1G085230.1 | Barley | mitochondrion | 38.69 | 37.84 |
| HORVU1Hr1G085150.1 | Barley | plastid | 38.44 | 36.08 |
| Solyc12g087870.1.1 | Tomato | plasma membrane | 32.16 | 35.96 |
| Solyc07g008440.2.1 | Tomato | plasma membrane | 32.16 | 34.88 |
| Solyc04g074870.2.1 | Tomato | extracellular, plasma membrane | 29.15 | 32.77 |
| Solyc06g035420.1.1 | Tomato | extracellular, plasma membrane | 26.63 | 32.22 |
| Solyc04g074880.2.1 | Tomato | plasma membrane | 27.39 | 30.7 |
| Solyc12g087880.1.1 | Tomato | extracellular, plasma membrane, vacuole | 13.07 | 30.59 |
| Solyc01g088550.2.1 | Tomato | plasma membrane | 27.89 | 30.49 |
| Solyc12g057090.1.1 | Tomato | plasma membrane | 21.36 | 28.62 |
| Solyc12g057100.1.1 | Tomato | cytosol, golgi, plasma membrane | 25.63 | 28.18 |
| Solyc08g077370.2.1 | Tomato | plasma membrane | 23.62 | 28.14 |
| Solyc07g005660.2.1 | Tomato | plasma membrane | 23.12 | 28.05 |
| Solyc08g077380.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 26.13 | 27.59 |
| Solyc02g071080.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid, vacuole | 16.58 | 26.51 |
| Solyc02g071110.2.1 | Tomato | plasma membrane | 24.87 | 26.12 |
| Solyc02g071100.2.1 | Tomato | nucleus | 24.37 | 25.87 |
| Solyc02g071090.2.1 | Tomato | plasma membrane | 24.37 | 25.87 |
| Solyc02g071060.2.1 | Tomato | plasma membrane | 24.62 | 24.81 |
| Solyc02g071050.2.1 | Tomato | plasma membrane | 23.87 | 24.55 |
| Solyc03g005820.2.1 | Tomato | plasma membrane | 24.62 | 23.33 |
| Solyc03g005810.2.1 | Tomato | endoplasmic reticulum, extracellular, plastid | 12.81 | 20.82 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, golgi | 0.75 | 2.56 |
Protein Annotations
| EnsemblPlants:Solyc10g005170.1.1 | EnsemblPlantsGene:Solyc10g005170.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PUP_plant | PANTHER:PTHR31376 | PANTHER:PTHR31376:SF3 |
| PFAM:PF16913 | SEG:seg | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI000276C552 | UniProt:K4CX50 |
| MapMan:24.2.1.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:137024..138220
Molecular Weight (calculated)
44928.4 Da
IEP (calculated)
6.510
GRAVY (calculated)
0.336
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFVSQPQPQ EHDDQRGNLK DLMIIDNENS DEIVQIQIIH EETNMSTSSE TTNKCYLFLL GMNYMLLFIG SISSSLLSKF YFNHKGNSRW VSTWVQSAGF
101: PLLLLPVYSP FYVFKSSNRK PFTNFTPKML LLSIVIGLFL GLNNLLFSWG NSYLPVSTNS LVLSLQLVFT LITSVVIVKQ KITYTNINCV FLLTLSSVLL
201: ALGSSHDKPK DLTKTKYFIG FFSTIGAGLL FAIYLPLMEK IYREVCCYSM VVEMQMVMEL SATVLATLGM IINGGFYEMK KEAKNVFDLG EKTYWLTVMV
301: NVVTWQFCFM GTAGMVFLSS SLTGGVCMTA LMTVNVLGGV IVFKDNFGLI KVISTLLCIW GFSSYLYGMY KKMEEKKDDS LEKIIINNEE KNMTTDDA
101: PLLLLPVYSP FYVFKSSNRK PFTNFTPKML LLSIVIGLFL GLNNLLFSWG NSYLPVSTNS LVLSLQLVFT LITSVVIVKQ KITYTNINCV FLLTLSSVLL
201: ALGSSHDKPK DLTKTKYFIG FFSTIGAGLL FAIYLPLMEK IYREVCCYSM VVEMQMVMEL SATVLATLGM IINGGFYEMK KEAKNVFDLG EKTYWLTVMV
301: NVVTWQFCFM GTAGMVFLSS SLTGGVCMTA LMTVNVLGGV IVFKDNFGLI KVISTLLCIW GFSSYLYGMY KKMEEKKDDS LEKIIINNEE KNMTTDDA
001: MSDGRVNADP QQEENMVKPP VKRSLTLLIV TYFFLFFGSI ASSLLAKYYF VYGGSSRWVS TWVQSAGFPL LLILIYFPHY VLKTTTRRPF TRFTLRHLIF
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA
Arabidopsis Description
PUP4Probable purine permease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY29]
SUBAcon: [peroxisome,vacuole,plasma membrane]
SUBAcon: [peroxisome,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.