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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 1
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:endoplasmic reticulum, plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G30840.1 HORVU7Hr1G088900.1 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G394100.1 Wheat plastid 84.92 79.46
HORVU1Hr1G085230.1 Barley mitochondrion 84.92 78.87
TraesCS1A01G386100.1 Wheat plastid 84.13 78.71
TraesCS1B01G413500.1 Wheat plastid 83.6 78.22
HORVU1Hr1G085120.1 Barley plastid 81.75 77.25
EES18657 Sorghum mitochondrion 67.46 73.91
HORVU1Hr1G085150.1 Barley plastid 81.75 72.88
Zm00001d038965_P001 Maize mitochondrion, plastid 70.37 72.68
OQU78406 Sorghum plastid 69.58 71.27
Os05t0556800-01 Rice mitochondrion 71.43 70.5
HORVU3Hr1G062690.1 Barley plastid 62.17 58.75
PGSC0003DMT400086024 Potato cytosol, endoplasmic reticulum, extracellular 16.67 44.68
PGSC0003DMT400090756 Potato endoplasmic reticulum, extracellular, vacuole 16.4 43.06
Solyc10g005160.1.1 Tomato plasma membrane 39.68 42.02
VIT_18s0089g01410.t01 Wine grape plasma membrane 38.1 41.86
Bra023141.1-P Field mustard plasma membrane 42.33 40.92
Bra023144.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 42.33 40.92
PGSC0003DMT400090938 Potato endoplasmic reticulum, extracellular 17.2 40.88
AT1G30840.1 Thale cress peroxisome, plasma membrane, vacuole 40.74 40.31
CDY02338 Canola plasma membrane 34.13 40.31
CDY09527 Canola plasma membrane 33.07 39.06
Solyc10g005150.1.1 Tomato plasma membrane 39.42 39.01
CDY09533 Canola plasma membrane 32.8 38.75
Solyc10g005170.1.1 Tomato cytosol, peroxisome, plasma membrane 40.48 38.44
KRH12150 Soybean plasma membrane 35.71 37.71
Solyc02g082170.1.1 Tomato plasma membrane 39.68 36.5
KRH37148 Soybean cytosol, peroxisome, plasma membrane 38.62 36.41
KRH12149 Soybean plasma membrane 38.1 35.64
KRH37149 Soybean plasma membrane 38.36 35.63
PGSC0003DMT400035529 Potato cytosol, mitochondrion, peroxisome, plastid 39.68 35.38
KRH37147 Soybean nucleus, peroxisome, plasma membrane 38.1 35.21
HORVU5Hr1G069880.1 Barley plasma membrane 23.55 32.96
HORVU4Hr1G078220.1 Barley endoplasmic reticulum, plasma membrane 21.43 29.78
HORVU5Hr1G104050.3 Barley cytosol, peroxisome, plasma membrane 29.63 26.86
HORVU5Hr1G069920.5 Barley cytosol 19.58 26.62
HORVU4Hr1G078210.1 Barley plastid 26.19 25.38
HORVU5Hr1G069960.1 Barley cytosol, plasma membrane 28.84 25.29
HORVU5Hr1G069910.2 Barley cytosol, peroxisome, plasma membrane 24.34 25.07
HORVU2Hr1G127530.7 Barley endoplasmic reticulum, plasma membrane 23.02 25.0
HORVU2Hr1G127610.1 Barley cytosol, plasma membrane 7.67 24.37
HORVU2Hr1G105300.1 Barley peroxisome 22.75 22.99
HORVU2Hr1G105340.1 Barley golgi, peroxisome, plasma membrane 23.55 22.76
HORVU2Hr1G105360.5 Barley peroxisome 24.6 22.57
HORVU5Hr1G088530.5 Barley cytosol, endoplasmic reticulum, peroxisome 24.07 22.03
HORVU2Hr1G105240.3 Barley peroxisome 23.55 21.6
HORVU7Hr1G086680.1 Barley mitochondrion 10.58 20.83
HORVU6Hr1G066740.2 Barley golgi, mitochondrion 23.02 20.81
HORVU5Hr1G019740.1 Barley cytosol, plastid 12.43 14.11
GSMUA_Achr10P... Banana cytosol, extracellular, golgi 1.06 3.42
Protein Annotations
EnsemblPlants:HORVU1Hr1G085140.1EnsemblPlantsGene:HORVU1Hr1G085140GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021InterPro:PUP_plantncoils:CoilPANTHER:PTHR31376
PANTHER:PTHR31376:SF7PFAM:PF16913SEG:segSUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI000B4730B3
UniProt:A0A287GK94MapMan:24.2.1.6::::
Description
No Description!
Coordinates
chrchr1H:-:535123370..535124506
Molecular Weight (calculated)
36233.2 Da
IEP (calculated)
7.894
GRAVY (calculated)
0.674
Length
378 amino acids
Sequence
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XNYAALLVGS VVSSLLSRFY FEHGGQNKWV VTLVQSAGFP TLVVAVFLAG RPVSAPRPFL WFSRRFLAVC
101: LFIGALMGVN NLLFAYSSSL LPVSTSSLLL STQLAFTLVL AVAIVRHPLT FVNLNAVVLM TLCSVLLALR SGDAGESPDR KGYILGFVVT LGAAGLFSAY
201: LPVMELLYRE AVSGGFILAV EVQAVMQAMA SVVAAIGLAA TGGFGNDVAH WKGSHAVYWV VVATLVVTWQ ACFMGTAGVI YLTSSLHSGV CMAAVLTANV
301: IGGVVVFGDP FGSEKAVATA LCVWGLSSYL YGEYRKNKRR AADGQDDGNT LISAGDDDGE SVHKSLTAAA GGGTVGTV
Best Arabidopsis Sequence Match ( AT1G30840.1 )
(BLAST)
001: MSDGRVNADP QQEENMVKPP VKRSLTLLIV TYFFLFFGSI ASSLLAKYYF VYGGSSRWVS TWVQSAGFPL LLILIYFPHY VLKTTTRRPF TRFTLRHLIF
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA
Arabidopsis Description
PUP4Probable purine permease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY29]
SUBAcon: [peroxisome,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.