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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
TargetP:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G30840.1 HORVU7Hr1G088900.1 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G300900.1 Wheat plastid 89.25 93.95
TraesCS3A01G267500.1 Wheat plastid 89.75 93.73
TraesCS3D01G267700.1 Wheat plastid 89.75 93.73
Os01t0680200-01 Rice cytosol, plasma membrane, vacuole 80.25 82.95
EES01264 Sorghum plasma membrane 80.25 82.95
Zm00001d043858_P001 Maize vacuole 81.75 82.58
Zm00001d011603_P001 Maize endoplasmic reticulum, plasma membrane, plastid, vacuole 76.25 79.22
HORVU1Hr1G085120.1 Barley plastid 63.25 63.25
HORVU1Hr1G085140.1 Barley endoplasmic reticulum 58.75 62.17
HORVU1Hr1G085230.1 Barley mitochondrion 62.5 61.43
HORVU1Hr1G085150.1 Barley plastid 60.25 56.84
VIT_18s0089g01410.t01 Wine grape plasma membrane 41.5 48.26
PGSC0003DMT400086024 Potato cytosol, endoplasmic reticulum, extracellular 17.0 48.23
Solyc10g005160.1.1 Tomato plasma membrane 42.5 47.62
CDY02338 Canola plasma membrane 38.0 47.5
AT1G30840.1 Thale cress peroxisome, plasma membrane, vacuole 45.0 47.12
Bra023141.1-P Field mustard plasma membrane 46.0 47.06
Bra023144.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 46.0 47.06
PGSC0003DMT400090756 Potato endoplasmic reticulum, extracellular, vacuole 16.75 46.53
CDY09527 Canola plasma membrane 36.75 45.94
CDY09533 Canola plasma membrane 36.5 45.62
Solyc10g005150.1.1 Tomato plasma membrane 41.75 43.72
PGSC0003DMT400090938 Potato endoplasmic reticulum, extracellular 17.25 43.4
KRH12150 Soybean plasma membrane 38.75 43.3
Solyc10g005170.1.1 Tomato cytosol, peroxisome, plasma membrane 43.0 43.22
KRH37148 Soybean cytosol, peroxisome, plasma membrane 42.5 42.39
Solyc02g082170.1.1 Tomato plasma membrane 43.5 42.34
KRH12149 Soybean plasma membrane 42.5 42.08
KRH37147 Soybean nucleus, peroxisome, plasma membrane 42.5 41.56
KRH37149 Soybean plasma membrane 42.25 41.52
PGSC0003DMT400035529 Potato cytosol, mitochondrion, peroxisome, plastid 43.75 41.27
HORVU5Hr1G069880.1 Barley plasma membrane 24.0 35.56
HORVU4Hr1G078220.1 Barley endoplasmic reticulum, plasma membrane 20.25 29.78
HORVU5Hr1G104050.3 Barley cytosol, peroxisome, plasma membrane 31.0 29.74
HORVU5Hr1G069960.1 Barley cytosol, plasma membrane 31.0 28.77
HORVU2Hr1G127530.7 Barley endoplasmic reticulum, plasma membrane 25.0 28.74
HORVU4Hr1G078210.1 Barley plastid 27.5 28.21
HORVU5Hr1G069920.5 Barley cytosol 19.5 28.06
HORVU2Hr1G105300.1 Barley peroxisome 24.25 25.94
HORVU5Hr1G069910.2 Barley cytosol, peroxisome, plasma membrane 23.5 25.61
HORVU2Hr1G105340.1 Barley golgi, peroxisome, plasma membrane 24.75 25.32
HORVU2Hr1G105360.5 Barley peroxisome 25.5 24.76
HORVU5Hr1G088530.5 Barley cytosol, endoplasmic reticulum, peroxisome 25.25 24.46
HORVU2Hr1G127610.1 Barley cytosol, plasma membrane 7.25 24.37
HORVU2Hr1G105240.3 Barley peroxisome 24.75 24.03
HORVU6Hr1G066740.2 Barley golgi, mitochondrion 23.5 22.49
HORVU7Hr1G086680.1 Barley mitochondrion 10.75 22.4
HORVU5Hr1G019740.1 Barley cytosol, plastid 12.75 15.32
Protein Annotations
EnsemblPlants:HORVU3Hr1G062690.1EnsemblPlantsGene:HORVU3Hr1G062690GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021InterPro:PUP_plantPANTHER:PTHR31376PANTHER:PTHR31376:SF7
PFAM:PF16913SEG:segSUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI000B46E0AEUniProt:A0A287LAY0
MapMan:24.2.1.6:::::
Description
No Description!
Coordinates
chrchr3H:+:479145964..479147613
Molecular Weight (calculated)
42272.4 Da
IEP (calculated)
9.441
GRAVY (calculated)
0.476
Length
400 amino acids
Sequence
(BLAST)
001: PLSLLTPTQR QVKSISLARS PMSITTSSSP PAILDMPASD VASNGERAAR RRRLLLCANY VALLGGSVAS SLLSRYYFAH GGRDRWVATL VQSVGFPVLL
101: LPVYAGRSAG EPRPFAWFTR RLLMACVVIG VLMGVNNLLF SYSSSYLPVS TSSLLLSTQL AFTLVLAAII VRHPLTFSNL NAVVLLTLSS VLLALRSSDS
201: GEQPDGGSRA RYFIGFAVTL GAAGLFAAYL PVMELLYRRA VSGGFRMVVE VQVVMQAAAT ALAVCGLVAA GRWGEELARW DRSPAAYWAL VAALVATWQA
301: CFMGTAGMVY LTSSLHSGVC MTAVLTANVI GGVVVFRDPF GAEKAIATVL CVWGFSSYLY GEYTTRHKQQ EGDGKVAAAS AGGDSDKSVT SGGDGAVETV
Best Arabidopsis Sequence Match ( AT1G30840.1 )
(BLAST)
001: MSDGRVNADP QQEENMVKPP VKRSLTLLIV TYFFLFFGSI ASSLLAKYYF VYGGSSRWVS TWVQSAGFPL LLILIYFPHY VLKTTTRRPF TRFTLRHLIF
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA
Arabidopsis Description
PUP4Probable purine permease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY29]
SUBAcon: [peroxisome,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.