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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
TargetP:mitochondrion
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G30840.1 HORVU7Hr1G088900.1 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1A01G386000.1 Wheat plastid 83.49 94.15
TraesCS1D01G394000.1 Wheat plastid 83.96 93.93
TraesCS1B01G413400.1 Wheat plastid 83.73 93.67
HORVU1Hr1G085140.1 Barley endoplasmic reticulum 72.88 81.75
HORVU1Hr1G085120.1 Barley plastid 75.24 79.75
HORVU1Hr1G085230.1 Barley mitochondrion 76.18 79.36
EES18657 Sorghum mitochondrion 61.56 75.65
Os05t0556800-01 Rice mitochondrion 66.98 74.15
OQU78406 Sorghum plastid 64.39 73.98
Zm00001d038965_P001 Maize mitochondrion, plastid 62.97 72.95
HORVU3Hr1G062690.1 Barley plastid 56.84 60.25
PGSC0003DMT400086024 Potato cytosol, endoplasmic reticulum, extracellular 14.86 44.68
Solyc10g005160.1.1 Tomato plasma membrane 37.03 43.98
PGSC0003DMT400090756 Potato endoplasmic reticulum, extracellular, vacuole 14.86 43.75
VIT_18s0089g01410.t01 Wine grape plasma membrane 34.43 42.44
Bra023141.1-P Field mustard plasma membrane 38.92 42.2
Bra023144.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 38.92 42.2
CDY02338 Canola plasma membrane 31.6 41.88
PGSC0003DMT400090938 Potato endoplasmic reticulum, extracellular 15.57 41.51
AT1G30840.1 Thale cress peroxisome, plasma membrane, vacuole 37.26 41.36
CDY09527 Canola plasma membrane 30.66 40.62
CDY09533 Canola plasma membrane 30.19 40.0
Solyc10g005150.1.1 Tomato plasma membrane 34.91 38.74
Solyc10g005170.1.1 Tomato cytosol, peroxisome, plasma membrane 36.08 38.44
KRH12150 Soybean plasma membrane 32.31 38.27
Solyc02g082170.1.1 Tomato plasma membrane 35.85 36.98
KRH37148 Soybean cytosol, peroxisome, plasma membrane 34.67 36.66
KRH37149 Soybean plasma membrane 35.14 36.61
KRH12149 Soybean plasma membrane 34.67 36.39
KRH37147 Soybean nucleus, peroxisome, plasma membrane 34.67 35.94
PGSC0003DMT400035529 Potato cytosol, mitochondrion, peroxisome, plastid 35.85 35.85
HORVU5Hr1G069880.1 Barley plasma membrane 21.23 33.33
HORVU4Hr1G078220.1 Barley endoplasmic reticulum, plasma membrane 17.92 27.94
HORVU5Hr1G104050.3 Barley cytosol, peroxisome, plasma membrane 27.12 27.58
HORVU5Hr1G069920.5 Barley cytosol 17.92 27.34
HORVU5Hr1G069960.1 Barley cytosol, plasma membrane 26.42 25.99
HORVU2Hr1G127530.7 Barley endoplasmic reticulum, plasma membrane 21.23 25.86
HORVU5Hr1G069910.2 Barley cytosol, peroxisome, plasma membrane 22.17 25.61
HORVU4Hr1G078210.1 Barley plastid 22.88 24.87
HORVU2Hr1G127610.1 Barley cytosol, plasma membrane 6.84 24.37
HORVU2Hr1G105300.1 Barley peroxisome 20.28 22.99
HORVU2Hr1G105360.5 Barley peroxisome 22.17 22.82
HORVU2Hr1G105340.1 Barley golgi, peroxisome, plasma membrane 20.99 22.76
HORVU5Hr1G088530.5 Barley cytosol, endoplasmic reticulum, peroxisome 21.7 22.28
HORVU2Hr1G105240.3 Barley peroxisome 21.23 21.84
HORVU7Hr1G086680.1 Barley mitochondrion 9.67 21.35
HORVU6Hr1G066740.2 Barley golgi, mitochondrion 20.52 20.81
HORVU5Hr1G019740.1 Barley cytosol, plastid 11.08 14.11
GSMUA_Achr10P... Banana cytosol, extracellular, golgi 0.94 3.42
Protein Annotations
EnsemblPlants:HORVU1Hr1G085150.1EnsemblPlantsGene:HORVU1Hr1G085150GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021InterPro:PUP_plantPANTHER:PTHR31376PANTHER:PTHR31376:SF7
PFAM:PF16913SEG:segSUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI000B46D0EBUniProt:A0A287GKB2
MapMan:24.2.1.6:::::
Description
No Description!
Coordinates
chrchr1H:+:535164577..535166272
Molecular Weight (calculated)
44625.5 Da
IEP (calculated)
9.415
GRAVY (calculated)
0.606
Length
424 amino acids
Sequence
(BLAST)
001: NPPYSTQSLA SWPYVSVHCH YKRVLVANSP LIHRFPLLVS SSTTMARAAM AISSGAAGPA AVAPRRRRST LLLMANYAAL LVGSVASSLL SRFYFDHGGK
101: NKWVVTLVQS AGFPVLVAAV FLAGLSRPAT APRPFLWFSR RFLAVCLAIG ALMGVSNLLF AYSTSLLPVS TSSLLLSMQL AFTLILAVVI VRHPLTFNNL
201: NAVVLMTLCS VLLALRSGDA GESPNRRGYI VGYVVTLCAA GLFSAYLPVM ELVYREAVSG GFILAVEVQA VMQAMATVEA AVGLAVSRGF SDDVAHWKGS
301: HAVYWVVVAT LVVTWQACFM GTAGVIYLTS SLHSGVCMAA VLTANVIGGV VVFGDPFGSE KAVATALCVW GLSSYLYGEY RKNKRRAADG QDDGNTLISA
401: GDDDGESVHK SLTAAAGGGT VGTV
Best Arabidopsis Sequence Match ( AT1G30840.1 )
(BLAST)
001: MSDGRVNADP QQEENMVKPP VKRSLTLLIV TYFFLFFGSI ASSLLAKYYF VYGGSSRWVS TWVQSAGFPL LLILIYFPHY VLKTTTRRPF TRFTLRHLIF
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA
Arabidopsis Description
PUP4Probable purine permease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY29]
SUBAcon: [peroxisome,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.