Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 7
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30840.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400086024 | Potato | cytosol, endoplasmic reticulum, extracellular | 28.49 | 69.5 |
| Solyc10g005160.1.1 | Tomato | plasma membrane | 67.44 | 64.99 |
| PGSC0003DMT400090938 | Potato | endoplasmic reticulum, extracellular | 29.07 | 62.89 |
| PGSC0003DMT400090756 | Potato | endoplasmic reticulum, extracellular, vacuole | 25.29 | 60.42 |
| Solyc10g005150.1.1 | Tomato | plasma membrane | 64.53 | 58.12 |
| AT1G30840.1 | Thale cress | peroxisome, plasma membrane, vacuole | 64.24 | 57.85 |
| CDY02338 | Canola | plasma membrane | 53.2 | 57.19 |
| Solyc10g005170.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 65.99 | 57.04 |
| Solyc02g082170.1.1 | Tomato | plasma membrane | 68.02 | 56.93 |
| PGSC0003DMT400035529 | Potato | cytosol, mitochondrion, peroxisome, plastid | 69.77 | 56.6 |
| Bra023141.1-P | Field mustard | plasma membrane | 64.24 | 56.52 |
| Bra023144.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 64.24 | 56.52 |
| CDY09527 | Canola | plasma membrane | 52.33 | 56.25 |
| KRH37148 | Soybean | cytosol, peroxisome, plasma membrane | 65.41 | 56.11 |
| CDY09533 | Canola | plasma membrane | 52.03 | 55.94 |
| KRH12150 | Soybean | plasma membrane | 57.85 | 55.59 |
| KRH12149 | Soybean | plasma membrane | 64.53 | 54.95 |
| KRH37147 | Soybean | nucleus, peroxisome, plasma membrane | 65.12 | 54.77 |
| KRH37149 | Soybean | plasma membrane | 62.79 | 53.07 |
| GSMUA_Achr6P30590_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 50.0 | 50.0 |
| GSMUA_Achr9P06170_001 | Banana | cytosol | 51.74 | 47.34 |
| GSMUA_Achr3P16440_001 | Banana | extracellular, peroxisome, plastid | 51.45 | 46.83 |
| TraesCS3B01G300900.1 | Wheat | plastid | 47.09 | 42.63 |
| EES18657 | Sorghum | mitochondrion | 42.44 | 42.32 |
| TraesCS3D01G267700.1 | Wheat | plastid | 47.09 | 42.3 |
| Os01t0504100-01 | Rice | plasma membrane | 46.51 | 42.22 |
| Os01t0680200-01 | Rice | cytosol, plasma membrane, vacuole | 47.38 | 42.12 |
| Zm00001d011603_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid, vacuole | 47.09 | 42.08 |
| TraesCS3A01G267500.1 | Wheat | plastid | 46.8 | 42.04 |
| Zm00001d043858_P001 | Maize | vacuole | 48.26 | 41.92 |
| EES01264 | Sorghum | plasma membrane | 47.09 | 41.86 |
| Zm00001d038965_P001 | Maize | mitochondrion, plastid | 44.48 | 41.8 |
| HORVU3Hr1G062690.1 | Barley | plastid | 48.26 | 41.5 |
| OQU78406 | Sorghum | plastid | 44.19 | 41.19 |
| GSMUA_Achr8P27440_001 | Banana | mitochondrion | 50.58 | 41.13 |
| TraesCS1B01G413400.1 | Wheat | plastid | 43.02 | 39.05 |
| TraesCS1D01G394000.1 | Wheat | plastid | 42.73 | 38.79 |
| TraesCS1A01G386000.1 | Wheat | plastid | 42.15 | 38.56 |
| Os05t0556800-01 | Rice | mitochondrion | 42.73 | 38.38 |
| HORVU1Hr1G085140.1 | Barley | endoplasmic reticulum | 41.86 | 38.1 |
| TraesCS1D01G393900.1 | Wheat | plastid | 43.6 | 38.07 |
| TraesCS1B01G413500.1 | Wheat | plastid | 43.6 | 37.13 |
| HORVU1Hr1G085120.1 | Barley | plastid | 43.02 | 37.0 |
| TraesCS1A01G386100.1 | Wheat | plastid | 43.31 | 36.88 |
| TraesCS1A01G385800.1 | Wheat | plastid | 43.31 | 36.88 |
| TraesCS1D01G394100.1 | Wheat | plastid | 43.02 | 36.63 |
| HORVU1Hr1G085230.1 | Barley | mitochondrion | 43.02 | 36.36 |
| TraesCS1B01G413300.1 | Wheat | mitochondrion | 43.6 | 35.55 |
| HORVU1Hr1G085150.1 | Barley | plastid | 42.44 | 34.43 |
| VIT_18s0001g06940.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 32.27 | 31.62 |
| VIT_18s0001g06910.t01 | Wine grape | plasma membrane | 32.27 | 31.62 |
| VIT_18s0001g06950.t01 | Wine grape | plasma membrane | 31.69 | 31.23 |
| VIT_18s0001g06300.t01 | Wine grape | cytosol, endoplasmic reticulum, plasma membrane | 27.33 | 29.75 |
| VIT_02s0012g00730.t01 | Wine grape | plasma membrane | 32.27 | 28.53 |
| VIT_10s0003g02850.t01 | Wine grape | plasma membrane | 30.23 | 28.11 |
| VIT_19s0014g00150.t01 | Wine grape | plasma membrane | 29.94 | 27.18 |
| VIT_11s0016g00010.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 25.0 | 24.29 |
| VIT_15s0021g00650.t01 | Wine grape | plastid | 26.74 | 24.21 |
| VIT_10s0003g02840.t01 | Wine grape | plasma membrane | 30.23 | 23.58 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, golgi | 0.58 | 1.71 |
Protein Annotations
| EntrezGene:100248269 | wikigene:100248269 | MapMan:24.2.1.6 | ProteinID:CCB44093 | ProteinID:CCB44093.1 | UniProt:F6GVV8 |
| EMBL:FN594956 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100248269 | wikigene:LOC100248269 | PFAM:PF16913 | PANTHER:PTHR31376 |
| PANTHER:PTHR31376:SF3 | InterPro:PUP_plant | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI0002108F64 | ArrayExpress:VIT_18s0089g01410 |
| EnsemblPlantsGene:VIT_18s0089g01410 | EnsemblPlants:VIT_18s0089g01410.t01 | unigene:Vvi.22850 | RefSeq:XP_002263453 | RefSeq:XP_002263453.1 | SEG:seg |
Description
No Description!
Coordinates
chr18:-:29309150..29310295
Molecular Weight (calculated)
38383.1 Da
IEP (calculated)
9.210
GRAVY (calculated)
0.656
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPTSKHYMV LLLITYFSLF VGSVSSTLLS KFYFIHKGSS IWVSTWVQSV GFPLLLLLIY LPHHLFKCTR RRPFTSFTPK LLLLSVFIGL MLGLNNFLFS
101: WGTSYLPVST ASLLLSSQLA FNLILSIIIV KQKITFSNFN CVILLTLSSI LLALSSNHDR PKDLTHAKYF IGFFSTIGAG LLFALYLPVM EMIYKKVYCY
201: EMVIEMQLVM EMAATALATI GMAAGHGFSE MKKESEMVFD LGPKAYWLTL VFNMVTWQFA FMGTAGLVFL TTSLTGGICM TALMAANVLG GVLAYGDKLG
301: GGKVVSTLLC VWGFCSYVYG MYVKMKEEEK NNNQSIQLPE QQMV
101: WGTSYLPVST ASLLLSSQLA FNLILSIIIV KQKITFSNFN CVILLTLSSI LLALSSNHDR PKDLTHAKYF IGFFSTIGAG LLFALYLPVM EMIYKKVYCY
201: EMVIEMQLVM EMAATALATI GMAAGHGFSE MKKESEMVFD LGPKAYWLTL VFNMVTWQFA FMGTAGLVFL TTSLTGGICM TALMAANVLG GVLAYGDKLG
301: GGKVVSTLLC VWGFCSYVYG MYVKMKEEEK NNNQSIQLPE QQMV
001: MSDGRVNADP QQEENMVKPP VKRSLTLLIV TYFFLFFGSI ASSLLAKYYF VYGGSSRWVS TWVQSAGFPL LLILIYFPHY VLKTTTRRPF TRFTLRHLIF
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA
Arabidopsis Description
PUP4Probable purine permease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY29]
SUBAcon: [peroxisome,vacuole,plasma membrane]
SUBAcon: [peroxisome,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.