Factsheet for GSMUA_Achr6P30590_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, peroxisome

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plasma membrane 3
plastid 1
extracellular 1
golgi 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30840.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P06170_001	Banana	cytosol	60.76	55.59
GSMUA_Achr3P16440_001	Banana	extracellular, peroxisome, plastid	60.17	54.76
PGSC0003DMT400090756	Potato	endoplasmic reticulum, extracellular, vacuole	21.51	51.39
Solyc10g005160.1.1	Tomato	plasma membrane	52.33	50.42
VIT_18s0089g01410.t01	Wine grape	plasma membrane	50.0	50.0
PGSC0003DMT400086024	Potato	cytosol, endoplasmic reticulum, extracellular	20.35	49.65
GSMUA_Achr8P27440_001	Banana	mitochondrion	58.72	47.75
Bra023141.1-P	Field mustard	plasma membrane	54.07	47.57
Bra023144.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	54.07	47.57
AT1G30840.1	Thale cress	peroxisome, plasma membrane, vacuole	51.74	46.6
KRH37148	Soybean	cytosol, peroxisome, plasma membrane	53.2	45.64
CDY02338	Canola	plasma membrane	42.44	45.62
KRH12149	Soybean	plasma membrane	53.2	45.3
PGSC0003DMT400090938	Potato	endoplasmic reticulum, extracellular	20.93	45.28
CDY09527	Canola	plasma membrane	41.86	45.0
Solyc10g005170.1.1	Tomato	cytosol, peroxisome, plasma membrane	52.03	44.97
KRH37147	Soybean	nucleus, peroxisome, plasma membrane	53.2	44.74
CDY09533	Canola	plasma membrane	41.57	44.69
Solyc10g005150.1.1	Tomato	plasma membrane	49.42	44.5
Solyc02g082170.1.1	Tomato	plasma membrane	51.16	42.82
PGSC0003DMT400035529	Potato	cytosol, mitochondrion, peroxisome, plastid	52.03	42.22
KRH12150	Soybean	plasma membrane	43.6	41.9
KRH37149	Soybean	plasma membrane	48.55	41.03
GSMUA_Achr5P24450_001	Banana	plasma membrane	33.14	30.98
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, vacuole	26.45	30.13
GSMUA_Achr5P12690_001	Banana	plasma membrane	30.52	30.09
GSMUA_Achr10P...	Banana	plasma membrane	35.17	24.64
GSMUA_Achr1P26440_001	Banana	plasma membrane	17.44	21.98
GSMUA_Achr10P...	Banana	cytosol, extracellular, golgi	1.16	3.42

Protein Annotations

MapMan:24.2.1.6	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr6G30590_001	EnsemblPlants:GSMUA_Achr6P30590_001	EnsemblPlants:GSMUA_Achr6T30590_001	UniProt:M0TBK4
PFAM:PF16913	PANTHER:PTHR31376	PANTHER:PTHR31376:SF3	InterPro:PUP_plant	SUPFAM:SSF103481	TMHMM:TMhelix
UniParc:UPI0002958B52	SEG:seg	:	:	:	:

Description

Probable purine permease 4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G30590_001]

Coordinates

chr6:+:30546800..30547834

Molecular Weight (calculated)

37257.9 Da

IEP (calculated)

9.485

GRAVY (calculated)

0.628

Length

344 amino acids

Sequence
(BLAST)

001: MENKGGDGEV SARGPGRVTS NGVRRILLAA NYTALFLGTL ASSLLSRFYF VHGGSSRWVS TLVQSAGFPL LLPLIYFSPR PPRTAFTPRL VLYCVLIGLF
101: LGVNNLFISW GVSYLPVSTS SLILSSQLAI NLLLSVVLVR QPLYFTNLNC VLLLTLSSIL LALNHSHERP SGVTSSQYII GVLTTLGAAV MFAVYLPIAQ
201: IVYRGVTAFR TVMEMQVVME AVATGFALVG MAATGGFKQM KREAAVEFDL GRNRYWVTIG ATIASWQLCF MGTAGMVFLT SSLNSGICST ALLVVNVVGG
301: LVVFHDEFGV QKAVSTVLCV WGFASYLYGE HRRKARADEE ELIV

Best Arabidopsis Sequence Match ( AT1G30840.1 )
(BLAST)

001: MSDGRVNADP QQEENMVKPP VKRSLTLLIV TYFFLFFGSI ASSLLAKYYF VYGGSSRWVS TWVQSAGFPL LLILIYFPHY VLKTTTRRPF TRFTLRHLIF
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA

Arabidopsis Description

PUP4Probable purine permease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY29]
SUBAcon: [plasma membrane,peroxisome,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.