Factsheet for VIT_06s0004g06270.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
golgi 2
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, golgi, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	peroxisome
Plant-mPloc:	golgi
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078032	Potato	cytosol, nucleus, peroxisome	67.17	68.73
Bra031568.1-P	Field mustard	peroxisome, plasma membrane, plastid	60.35	66.02
CDY06248	Canola	peroxisome, plasma membrane, plastid	60.35	66.02
CDY09926	Canola	nucleus, peroxisome, plasma membrane	59.85	65.47
KRG98331	Soybean	cytosol, peroxisome, plasma membrane	64.39	64.89
Bra015571.1-P	Field mustard	nucleus, peroxisome, plasma membrane	61.36	64.29
CDY06695	Canola	nucleus, peroxisome, plasma membrane	61.36	64.29
CDY10265	Canola	nucleus, peroxisome, plasma membrane	60.86	64.27
Zm00001d034706_P001	Maize	cytosol, peroxisome, vacuole	59.34	60.57
Os03t0826300-00	Rice	cytosol, peroxisome, vacuole	59.09	60.47
TraesCS5D01G502800.1	Wheat	cytosol, peroxisome, vacuole	59.34	59.49
Solyc06g076830.1.1	Tomato	plastid	66.92	59.42
TraesCS5A01G487900.1	Wheat	cytosol, peroxisome, vacuole	58.84	58.99
TraesCS5B01G501700.1	Wheat	cytosol, peroxisome, vacuole	58.84	58.99
CDY05069	Canola	cytosol, endoplasmic reticulum, plasma membrane	15.15	57.14
AT1G07290.1	Thale cress	cytosol, peroxisome, plasma membrane	50.25	56.21
HORVU5Hr1G114990.3	Barley	extracellular, mitochondrion, plasma membrane	57.83	52.77
KXG37228	Sorghum	plastid	59.85	52.2
VIT_04s0044g01330.t01	Wine grape	plasma membrane	43.69	51.18
CDY65829	Canola	cytosol, peroxisome, plastid	19.95	38.54

Protein Annotations

EntrezGene:100262025	wikigene:100262025	MapMan:24.2.1.1.4	ProteinID:CBI15984	ProteinID:CBI15984.3	UniProt:D7SK08
EMBL:FN594951	GO:GO:0003674	GO:GO:0005215	GO:GO:0005338	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015780	GO:GO:0015784	GO:GO:0016020	GO:GO:0016021	GO:GO:1990570
EntrezGene:LOC100262025	wikigene:LOC100262025	PFAM:PF03151	PANTHER:PTHR44371	PANTHER:PTHR44371:SF2	InterPro:Sugar_P_trans_dom
TMHMM:TMhelix	UniParc:UPI00015C7BF9	ArrayExpress:VIT_06s0004g06270	EnsemblPlantsGene:VIT_06s0004g06270	EnsemblPlants:VIT_06s0004g06270.t01	RefSeq:XP_002279549
RefSeq:XP_002279549.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:7057170..7061114

Molecular Weight (calculated)

44167.7 Da

IEP (calculated)

9.664

GRAVY (calculated)

0.512

Length

396 amino acids

Sequence
(BLAST)

001: MQVHAMTSDF NPDVDIYNDY KESDVSSLNG KVTLRERVNA VYKVLDGLRK QGNRSISNIA MNAEHKATRY NMFIFSSSNV NILIDGGEKR EHGLGRKSEP
101: LLSGTAYCIS SCSMILLNKI VLSSYGFNAG ISLMFYQNFI SSVVVVVLAL CGVASVERLN WKLIRVWIPV NIIFIGMLVS GMYSLKYINI AMVTILKNVT
201: NILTAIGEYY IFHKHQNQKV WTAMFLMIIS AISGGITDLS FNLKGYVWQI LNCVLTASYS LTLRLVMDKA KQLTRSGSLN EVSMVLLNNL LSLPFSILLI
301: FLFGEWEYVI NVDVVRIPMF WVLATTSGLT GLSISFTSMW FLNQTGPTTY SLVGSLNKIP ISLAGIVLFN VPLSLPNFFS ILFGLFAGVF FVKAKM

Best Arabidopsis Sequence Match ( AT2G13650.3 )
(BLAST)

001: MKLYEHDGVD LEDGKTVKSG GDKPIPRKIH NRALLSGLAY CISSCSMILV NKFVLSSYNF NAGIFLMLYQ NFVSVIIVVG LSLMGLITTE PLTLRLMKVW
101: FPVNVIFVGM LITSMFSLKY INVAMVTVLK NVTNVITAVG EMYLFNKQHD NRVWAALFLM IISAVSGGIT DLSFNAVGYA WQIANCFLTA SYSLTLRKTM
201: DTAKQVTQSG NLNEFSMVLL NNTLSLPLGL LLSYFFNEMD YLYQTPLLRL PSFWMVMTLS GLLGLAISFT SMWFLHQTGA TTYSLVGSLN KIPLSIAGIV
301: LFNVPTSLQN SASILFGLVA GVVFARAKMR EKS

Arabidopsis Description

GONST1GDP-mannose transporter (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1B0VP09]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.