CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034706_P001	Maize	cytosol, peroxisome, vacuole	82.38	96.39
Os03t0826300-00	Rice	cytosol, peroxisome, vacuole	76.43	89.66
TraesCS5B01G501700.1	Wheat	cytosol, peroxisome, vacuole	74.45	85.57
TraesCS5D01G502800.1	Wheat	cytosol, peroxisome, vacuole	74.01	85.06
TraesCS5A01G487900.1	Wheat	cytosol, peroxisome, vacuole	73.35	84.3
HORVU5Hr1G114990.3	Barley	extracellular, mitochondrion, plasma membrane	72.25	75.58
PGSC0003DMT400078032	Potato	cytosol, nucleus, peroxisome	51.76	60.72
Bra031568.1-P	Field mustard	peroxisome, plasma membrane, plastid	48.02	60.22
CDY10265	Canola	nucleus, peroxisome, plasma membrane	49.56	60.0
CDY06248	Canola	peroxisome, plasma membrane, plastid	47.8	59.94
VIT_06s0004g06270.t01	Wine grape	peroxisome	52.2	59.85
Bra015571.1-P	Field mustard	nucleus, peroxisome, plasma membrane	49.78	59.79
CDY06695	Canola	nucleus, peroxisome, plasma membrane	49.78	59.79
CDY09926	Canola	nucleus, peroxisome, plasma membrane	47.36	59.39
KRG98331	Soybean	cytosol, peroxisome, plasma membrane	51.1	59.03
Solyc06g076830.1.1	Tomato	plastid	53.96	54.93
CDY05069	Canola	cytosol, endoplasmic reticulum, plasma membrane	12.56	54.29
AT1G07290.1	Thale cress	cytosol, peroxisome, plasma membrane	39.21	50.28
OQU79763	Sorghum	mitochondrion	44.49	47.31
CDY65829	Canola	cytosol, peroxisome, plastid	16.96	37.56

Protein Annotations

EnsemblPlants:KXG37228	EnsemblPlantsGene:SORBI_3001G029500	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015780
GO:GO:0015784	GO:GO:0016020	GO:GO:0016021	InterPro:Sugar_P_trans_dom	PANTHER:PTHR44371	PANTHER:PTHR44371:SF2
PFAM:PF03151	ProteinID:KXG37228	ProteinID:KXG37228.1	SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix
UniParc:UPI00081AC599	UniProt:A0A1B6QH29	MapMan:24.2.1.1.4	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:2293896..2297802

Molecular Weight (calculated)

49561.5 Da

IEP (calculated)

9.925

GRAVY (calculated)

0.514

Length

454 amino acids

Sequence
(BLAST)

001: MPSKGISGPL LAPTVHRRFP HRLSLSLSSS PLSLHLQPPP TPPDAALLAL RRTAGGLLLP GAAASMSLEF RSECDDIEEA KSPSNTSVAA VAVKNADASV
101: YKIIHGYLKQ KNNSIIKVAA NVARKAASNK LSRKTSDVFD TLLQKQQSKW GNKAGPLLSG ICYCIASCSM ILLNKVVLSG YNFDAGISLM LYQNLISVVI
201: LLLLELFHVI STEELTWKLI KVWIPVNLIF IGMLLTGMYS LKYINVAMVT ILKNMTNIIT AIGEIYIFRK GQNKKVWAAL FLMIVSAICG GITDLSFHLV
301: GYTWQILNCF LTAGYSLTLR RLMDTAKQST KSGSLNEVSM VLLNNALSIP FALILVVIFN EWEYVYQAEV IRDPMFWVVA TASGLLGLAI SFSSVWFLHR
401: TGPTTYSLVG SLNKIPISIA GILLFNVPVS VENLCSIVFG LFAGIFFAKA KMSS

Best Arabidopsis Sequence Match ( AT2G13650.3 )
(BLAST)

001: MKLYEHDGVD LEDGKTVKSG GDKPIPRKIH NRALLSGLAY CISSCSMILV NKFVLSSYNF NAGIFLMLYQ NFVSVIIVVG LSLMGLITTE PLTLRLMKVW
101: FPVNVIFVGM LITSMFSLKY INVAMVTVLK NVTNVITAVG EMYLFNKQHD NRVWAALFLM IISAVSGGIT DLSFNAVGYA WQIANCFLTA SYSLTLRKTM
201: DTAKQVTQSG NLNEFSMVLL NNTLSLPLGL LLSYFFNEMD YLYQTPLLRL PSFWMVMTLS GLLGLAISFT SMWFLHQTGA TTYSLVGSLN KIPLSIAGIV
301: LFNVPTSLQN SASILFGLVA GVVFARAKMR EKS

Arabidopsis Description

GONST1GDP-mannose transporter (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1B0VP09]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.