CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05069	Canola	cytosol, endoplasmic reticulum, plasma membrane	38.05	74.29
CDY06248	Canola	peroxisome, plasma membrane, plastid	46.34	26.24
CDY09926	Canola	nucleus, peroxisome, plasma membrane	45.37	25.69
CDY06695	Canola	nucleus, peroxisome, plasma membrane	45.37	24.6
AT1G07290.1	Thale cress	cytosol, peroxisome, plasma membrane	42.44	24.58
CDY10265	Canola	nucleus, peroxisome, plasma membrane	44.88	24.53
PGSC0003DMT400078032	Potato	cytosol, nucleus, peroxisome	40.49	21.45
Os03t0826300-00	Rice	cytosol, peroxisome, vacuole	38.54	20.41
KRG98331	Soybean	cytosol, peroxisome, plasma membrane	39.02	20.36
Zm00001d034706_P001	Maize	cytosol, peroxisome, vacuole	38.05	20.1
VIT_06s0004g06270.t01	Wine grape	peroxisome	38.54	19.95
TraesCS5A01G487900.1	Wheat	cytosol, peroxisome, vacuole	37.56	19.49
TraesCS5B01G501700.1	Wheat	cytosol, peroxisome, vacuole	37.07	19.24
TraesCS5D01G502800.1	Wheat	cytosol, peroxisome, vacuole	37.07	19.24
Solyc06g076830.1.1	Tomato	plastid	40.49	18.61
KXG37228	Sorghum	plastid	37.56	16.96
HORVU5Hr1G114990.3	Barley	extracellular, mitochondrion, plasma membrane	34.15	16.13
CDY39936	Canola	cytosol, peroxisome, plasma membrane	21.46	13.37
CDX95295	Canola	cytosol, peroxisome, plasma membrane	21.46	13.21

Protein Annotations

EnsemblPlants:CDY65829	EnsemblPlantsGene:GSBRNA2T00048312001	GO:A0A078JGM2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Armadillo	InterPro:IPR000225	ncoils:Coil
PANTHER:PTHR44371	PANTHER:PTHR44371:SF2	PFAM:PF00514	ProteinID:CDY65829	ProteinID:CDY65829.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EF2ABD	UniProt:A0A078JGM2	MapMan:35.1	:	:

Description

BnaC01g43990DBnaC01g43990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGM2]

Coordinates

chrLK034968:-:4987..6526

Molecular Weight (calculated)

22677.7 Da

IEP (calculated)

10.365

GRAVY (calculated)

0.264

Length

205 amino acids

Sequence
(BLAST)

001: MVRSIWEEKV VFSLHDFSAS SPLDMDVSYG QLFKHEWLGF SLSLILSSTA TTVTKSVSLG GSENRIKIAK AGAVKPLISL ISFSDPLEVT RDAMFWVVVT
101: ETASGFLGLA ISFTSMWFLH QTGPTTYILV GSLNKVPISL SGLVLFDVPL SLPNLFSILF GLFAGVVFAR AKCHNRVSKP KYNSFAEAED NLKKKKQRRK
201: RLLNL

Best Arabidopsis Sequence Match ( AT1G07290.1 )
(BLAST)

001: MSAVKLEAIV CHEPDESELS HLSDNGSKTK NGVVFQLLDQ KSSEHRWFSE RFLRWRRRYL PVDGDNRRDH GSVKQSGPLV SGAAYCISSC SMIILNKIVL
101: SSYNFNAGVS LMLYQNLISC LVVAVLDISG VVSVEKFNWK LIRVWMPVNV IFVGMLVSGM YRNRGGIHVP QKAEQQGLGC NVHDDHFCNQ RRYHGSHIRC
201: SRVTWQLANC FLTASYSLTL RRVMDKAKQS TKSGSLNEVS MVLLNNLLSI PFGIILIILL GEWRYVISTD VTKDSMFWVV ATASGFLGLA ISFTSMWFLH
301: QTGPTTYSLV GSLNKVPISL AGLVLFNVPL SLPNLFSILF GLFAGVVFAR AKMS

Arabidopsis Description

GONST2golgi nucleotide sugar transporter 2 [Source:TAIR;Acc:AT1G07290]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.