CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06248	Canola	peroxisome, plasma membrane, plastid	95.86	95.86
CDY06695	Canola	nucleus, peroxisome, plasma membrane	85.64	82.01
CDY10265	Canola	nucleus, peroxisome, plasma membrane	84.53	81.6
CDY05069	Canola	cytosol, endoplasmic reticulum, plasma membrane	21.55	74.29
PGSC0003DMT400078032	Potato	cytosol, nucleus, peroxisome	66.85	62.53
KRG98331	Soybean	cytosol, peroxisome, plasma membrane	66.57	61.32
VIT_06s0004g06270.t01	Wine grape	peroxisome	65.47	59.85
Os03t0826300-00	Rice	cytosol, peroxisome, vacuole	59.94	56.07
Zm00001d034706_P001	Maize	cytosol, peroxisome, vacuole	59.39	55.41
Solyc06g076830.1.1	Tomato	plastid	67.4	54.71
TraesCS5D01G502800.1	Wheat	cytosol, peroxisome, vacuole	58.84	53.92
TraesCS5A01G487900.1	Wheat	cytosol, peroxisome, vacuole	58.56	53.67
TraesCS5B01G501700.1	Wheat	cytosol, peroxisome, vacuole	58.56	53.67
CDY39936	Canola	cytosol, peroxisome, plasma membrane	46.41	51.06
CDX95295	Canola	cytosol, peroxisome, plasma membrane	46.41	50.45
HORVU5Hr1G114990.3	Barley	extracellular, mitochondrion, plasma membrane	56.91	47.47
KXG37228	Sorghum	plastid	59.39	47.36
CDY65829	Canola	cytosol, peroxisome, plastid	25.69	45.37

Protein Annotations

EnsemblPlants:CDY09926	EnsemblPlantsGene:GSBRNA2T00031693001	GO:A0A078F957	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Sugar_P_trans_dom	PANTHER:PTHR44371	PANTHER:PTHR44371:SF2	PFAM:PF03151	ProteinID:CDY09926	ProteinID:CDY09926.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EADCAA	UniProt:A0A078F957	MapMan:24.2.1.1.4	:

Description

BnaC08g45250DBnaC08g45250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F957]

Coordinates

chrLK032000:+:108476..110306

Molecular Weight (calculated)

40121.7 Da

IEP (calculated)

9.983

GRAVY (calculated)

0.484

Length

362 amino acids

Sequence
(BLAST)

001: MTDVEREAIV CDESELNRFS DNASKSLVNQ LHRGFSERFL RWRRRFLPFG GDNRRGHGSV KLSGPLVSGA AYCVSSCSMI IMNKIVLSSY NFNAGVSLML
101: YQNLISCLVV ALLKLSGVVS VERFNWKLIR VWMPVNVIFV GMLISGMYSL KYINVAMVTI LKNATNIITA VGELYMFRKR QNNKVWAAMF MMIISAISGG
201: ITDLTFNALG YTCQTANCVL TASYSLTLRR VMDKAKQSTK SGSLNEVSMV LLNNLLSLPF GIILIILLGE WRYVISTDVT QDTMFWVAAT ASGFLGLAIS
301: FTSMWFLHQT GPTTYSLVGS LNKVPISLSG LVLFDVPLSL PNLFSILFGL FAGVVFARDK MS

Best Arabidopsis Sequence Match ( AT1G07290.1 )
(BLAST)

001: MSAVKLEAIV CHEPDESELS HLSDNGSKTK NGVVFQLLDQ KSSEHRWFSE RFLRWRRRYL PVDGDNRRDH GSVKQSGPLV SGAAYCISSC SMIILNKIVL
101: SSYNFNAGVS LMLYQNLISC LVVAVLDISG VVSVEKFNWK LIRVWMPVNV IFVGMLVSGM YRNRGGIHVP QKAEQQGLGC NVHDDHFCNQ RRYHGSHIRC
201: SRVTWQLANC FLTASYSLTL RRVMDKAKQS TKSGSLNEVS MVLLNNLLSI PFGIILIILL GEWRYVISTD VTKDSMFWVV ATASGFLGLA ISFTSMWFLH
301: QTGPTTYSLV GSLNKVPISL AGLVLFNVPL SLPNLFSILF GLFAGVVFAR AKMS

Arabidopsis Description

GONST2golgi nucleotide sugar transporter 2 [Source:TAIR;Acc:AT1G07290]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.