CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
plasma membrane 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92493
EER96576
EER96738
EER98907
EES01496
EES01744
EES03354
EES06576
EES07044
EES13913
EES19575
KXG22060
KXG22062
KXG22064
KXG22152
KXG35986
OQU87429
OQU88438

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26650.1	EER92493	AT1G07430.1	17898163
AT2G26650.1	EER96576	AT1G07430.1	17898163
AT2G26650.1	EES01744	AT1G07430.1	17898163
AT2G26650.1	KXG22152	AT1G07430.1	17898163
AT2G26650.1	KXG35986	AT1G07430.1	17898163
AT2G26650.1	OQU88438	AT1G30270.1	16814720
AT2G26650.1	OQU88438	AT1G30270.1	17898163
AT2G26650.1	EER98907	AT2G25090.1	17898163
AT2G26650.1	EES03354	AT2G26650.1	12678562
AT2G26650.1	EES03354	AT2G26650.1	15299147
AT2G26650.1	EES03354	AT2G26650.1	9218788
AT2G26650.1	EES19575	AT4G22200.1	12678562
AT2G26650.1	KXG22060	AT4G22200.1	12678562
AT2G26650.1	KXG22062	AT4G22200.1	12678562
AT2G26650.1	KXG22064	AT4G22200.1	12678562
AT2G26650.1	EES19575	AT4G22200.1	15299147
AT2G26650.1	KXG22060	AT4G22200.1	15299147
AT2G26650.1	KXG22062	AT4G22200.1	15299147
AT2G26650.1	KXG22064	AT4G22200.1	15299147
AT2G26650.1	EER96738	AT4G30960.1	17898163
AT2G26650.1	EES13913	AT4G30960.1	17898163
AT2G26650.1	EES07044	AT4G32650.1	12678562
AT2G26650.1	OQU87429	AT4G32650.1	12678562
AT2G26650.1	EES07044	AT4G32650.1	15299147
AT2G26650.1	OQU87429	AT4G32650.1	15299147
AT2G26650.1	EES01496	AT5G46240.1	15299147
AT2G26650.1	EES06576	AT5G46240.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044056_P003	Maize	plasma membrane, plastid	94.35	94.14
TraesCS3B01G265500.1	Wheat	plasma membrane	80.79	79.71
HORVU3Hr1G058300.1	Barley	plasma membrane	80.68	79.51
TraesCS3A01G233800.1	Wheat	plasma membrane	80.45	79.38
TraesCS3D01G219600.1	Wheat	plasma membrane	80.23	79.15
Os01t0648000-01	Rice	plasma membrane	81.36	77.01
GSMUA_AchrUn_...	Banana	plasma membrane	62.6	70.04
GSMUA_Achr3P20680_001	Banana	cytosol, nucleus, plasma membrane	63.5	69.99
GSMUA_Achr5P09840_001	Banana	plasma membrane	63.16	68.17
GSMUA_Achr4P09000_001	Banana	plasma membrane	42.82	67.8
GSMUA_Achr4P08990_001	Banana	cytosol, mitochondrion, plasma membrane	60.68	65.81
VIT_11s0016g04750.t01	Wine grape	plasma membrane	64.41	65.37
PGSC0003DMT400002746	Potato	plasma membrane	62.94	63.73
Solyc12g006850.1.1	Tomato	plasma membrane	63.5	63.65
AT2G26650.1	Thale cress	plasma membrane	60.79	62.78
KRH03745	Soybean	plasma membrane	61.81	62.51
KRH56647	Soybean	plasma membrane	62.82	62.26
CDY35373	Canola	cytosol, plasma membrane, vacuole	59.44	61.16
Bra032037.1-P	Field mustard	cytosol	59.32	61.05
VIT_04s0008g04990.t01	Wine grape	mitochondrion	61.92	61.02
CDY55714	Canola	cytosol, plasma membrane, vacuole	59.32	60.98
EER95927	Sorghum	plastid	61.69	59.41
PGSC0003DMT400091020	Potato	peroxisome, plasma membrane	39.21	56.79
CDX68851	Canola	plasma membrane	54.58	56.36
PGSC0003DMT400074787	Potato	cytosol, nucleus, plasma membrane	54.69	56.21
Solyc08g066990.2.1	Tomato	plasma membrane	54.35	55.8
Solyc09g005220.1.1	Tomato	cytosol	17.97	55.59
KRH05105	Soybean	cytosol, plasma membrane, vacuole	54.12	55.31
KRH61812	Soybean	plasma membrane	54.8	55.24
KRH16013	Soybean	plasma membrane	54.58	55.2
KRH52490	Soybean	plasma membrane	54.58	54.95
CDX75249	Canola	plasma membrane	54.35	54.91
Bra011351.1-P	Field mustard	cytosol	54.35	54.91
Bra007785.1-P	Field mustard	cytosol	53.56	54.73
CDX76746	Canola	cytosol	54.35	54.72
AT4G32500.1	Thale cress	plasma membrane	54.35	54.66
CDY11516	Canola	cytosol	54.12	54.62
AT2G25600.1	Thale cress	cytosol	54.8	54.62
Solyc05g017930.1.1	Tomato	nucleus, plasma membrane	8.81	54.55
EES01496	Sorghum	mitochondrion, plasma membrane	32.2	53.77
EES06576	Sorghum	plasma membrane	36.27	44.03
OQU87429	Sorghum	mitochondrion	29.6	41.92
EES19575	Sorghum	plastid	36.61	38.71
KXG22060	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	30.4	38.7
KXG22062	Sorghum	plastid	6.78	37.74
EES07044	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	25.31	37.27
KXG22064	Sorghum	plastid	34.92	36.7
EES10868	Sorghum	cytosol	26.33	32.14
KXG19708	Sorghum	cytosol	28.02	29.04

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	EntrezGene:8058236	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	UniProt:C5XF65	EnsemblPlants:EES03354	ProteinID:EES03354	ProteinID:EES03354.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244	GO:GO:0005249	GO:GO:0005267
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0034765	GO:GO:0042391	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595
InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom
InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	PFAM:PF12796
PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PFscan:PS51490
PANTHER:PTHR10217	PANTHER:PTHR10217:SF504	InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248	EnsemblPlantsGene:SORBI_3003G237900
SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI0001A850F8	RefSeq:XP_002458234.1
InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:57719603..57725845

Molecular Weight (calculated)

99327.4 Da

IEP (calculated)

7.406

GRAVY (calculated)

-0.130

Length

885 amino acids

Sequence
(BLAST)

001: MAGWGSSRVA ACGPWGRGAA LERELSRDGS HYSISSGILP SLGARSNRRV KLRPFIVSPY DRRYRCWETF LIILVVYSAW VSPFEFGFIR KPTGALAAVD
101: NVVNAFFAVD IILTFFVAYL DRMTYLLEDD PKRIAWRYTT SWFVLDVAST IPSEFARRIL PPNLRSYGFF NMLRLWRLRR VSSLFARLEK DRHFNYFWVR
201: CAKLICVTLF AVHCSACFYY LLADRYPVPT DTWIGNSMPD FHQRGLWIRY VISVYWSITT LTTVGYGDLH AENTREMIFN IFYMLFNLGL TAYLIGNMTN
301: LVVHGTSRTR KYRDTIQAAT SFALRNQLPS RLQDQMISHL SLKFRTDSEG LQQQETLDAL PKAIRSSISQ YLFFNLVQKV YLFEGVSNDL IFQLVSEMKA
401: EYFPPREDVI LQNEAPTDFY ILVTGSAELV ELRNGGEQIA GVAKAGDVVG EIGVLCYRPQ LFTVRTKSLC QLLRMNRTAF LSLVQSNVAD GTIIMNNLMQ
501: LLKEQKDNSV MAGVLKEIEN MLARGRLDLP VTLCFAVNKG DDFMLHQLLK RGLDPNESDN NGHTALHIAA SKGDEQCVKL LLDYGADPNA RDSEGKVPLW
601: EALCEKHNAV IELLVESGAE LSSGDTALYA CIAVEENDAE LLENIIRYGG NINSSTKDGT TPLHRAVCDG NVQMVELLLE HGADINKQDN NGWSARDLAD
701: QQGHDDIQVL FKSRKAHRQH ASNGRVAPML IGRFNSEPSM PNMNHEDAEV RSKVVPQKLL RKRVSFQNSL FGVISSSQAR QDTGGLLSKG LAGTGGPSCH
801: HDSLIRVTIS CPEKGNAAGK LVRLPRSMTE LLELGAKKFD FKPTKVLTVG GAEIDEVELI RDGDHIVLVS SDWVPDVAQI RPNDQ

Best Arabidopsis Sequence Match ( AT2G26650.1 )
(BLAST)

001: MRGGALLCGQ VQDEIEQLSR ESSHFSLSTG ILPSLGARSN RRVKLRRFVV SPYDHKYRIW EAFLVVLVVY TAWVSPFEFG FLRKPRPPLS ITDNIVNAFF
101: AIDIIMTFFV GYLDKSTYLI VDDRKQIAFK YLRSWFLLDL VSTIPSEAAM RISSQSYGLF NMLRLWRLRR VGALFARLEK DRNFNYFWVR CAKLVCVTLF
201: AVHCAACFYY LIAARNSNPA KTWIGANVAN FLEESLWMRY VTSMYWSITT LTTVGYGDLH PVNTKEMIFD IFYMLFNLGL TAYLIGNMTN LVVHGTSRTR
301: NFRDTIQAAS NFAHRNHLPP RLQDQMLAHL CLKYRTDSEG LQQQETLDAL PKAIRSSISH FLFYSLMDKV YLFRGVSNDL LFQLVSEMKA EYFPPKEDVI
401: LQNEAPTDFY ILVNGTADLV DVDTGTESIV REVKAGDIIG EIGVLCYRPQ LFTVRTKRLC QLLRMNRTTF LNIIQANVGD GTIIMNNLLQ HLKEMNDPVM
501: TNVLLEIENM LARGKMDLPL NLCFAAIRED DLLLHQLLKR GLDPNESDNN GRTPLHIAAS KGTLNCVLLL LEYHADPNCR DAEGSVPLWE AMVEGHEKVV
601: KVLLEHGSTI DAGDVGHFAC TAAEQGNLKL LKEIVLHGGD VTRPRATGTS ALHTAVCEEN IEMVKYLLEQ GADVNKQDMH GWTPRDLAEQ QGHEDIKALF
701: REKLHERRVH IETSSSVPIL KTGIRFLGRF TSEPNIRPAS REVSFRIRET RARRKTNNFD NSLFGILANQ SVPKNGLATV DEGRTGNPVR VTISCAEKDD
801: IAGKLVLLPG SFKELLELGS NKFGIVATKV MNKDNNAEID DVDVIRDGDH LIFATDS

Arabidopsis Description

AKT1Potassium channel AKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q38998]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.