Factsheet for Solyc12g006850.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 2
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010080.2.1
Solyc01g104030.2.1
Solyc02g021440.2.1
Solyc02g070530.2.1
Solyc03g058900.1.1
Solyc05g017930.1.1
Solyc06g076400.2.1
Solyc07g005440.1.1
Solyc08g016500.2.1
Solyc08g067310.1.1
Solyc08g068000.1.1
Solyc10g024360.1.1
Solyc12g006850.1.1
Solyc12g010130.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26650.1	Solyc06g076400.2.1	AT1G07430.1	17898163
AT2G26650.1	Solyc02g021440.2.1	AT1G30270.1	16814720
AT2G26650.1	Solyc02g021440.2.1	AT1G30270.1	17898163
AT2G26650.1	Solyc08g067310.1.1	AT2G25090.1	17898163
AT2G26650.1	Solyc05g017930.1.1	AT2G26650.1	12678562
AT2G26650.1	Solyc12g006850.1.1	AT2G26650.1	12678562
AT2G26650.1	Solyc05g017930.1.1	AT2G26650.1	15299147
AT2G26650.1	Solyc12g006850.1.1	AT2G26650.1	15299147
AT2G26650.1	Solyc05g017930.1.1	AT2G26650.1	9218788
AT2G26650.1	Solyc12g006850.1.1	AT2G26650.1	9218788
AT2G26650.1	Solyc01g104030.2.1	AT4G22200.1	12678562
AT2G26650.1	Solyc10g024360.1.1	AT4G22200.1	12678562
AT2G26650.1	Solyc01g104030.2.1	AT4G22200.1	15299147
AT2G26650.1	Solyc10g024360.1.1	AT4G22200.1	15299147
AT2G26650.1	Solyc07g005440.1.1	AT4G30960.1	17898163
AT2G26650.1	Solyc12g010130.1.1	AT4G30960.1	17898163
AT2G26650.1	Solyc01g010080.2.1	AT4G32650.1	12678562
AT2G26650.1	Solyc08g068000.1.1	AT4G32650.1	12678562
AT2G26650.1	Solyc01g010080.2.1	AT4G32650.1	15299147
AT2G26650.1	Solyc08g068000.1.1	AT4G32650.1	15299147
AT2G26650.1	Solyc02g070530.2.1	AT5G46240.1	15299147
AT2G26650.1	Solyc03g058900.1.1	AT5G46240.1	15299147
AT2G26650.1	Solyc08g016500.2.1	AT5G46240.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002746	Potato	plasma membrane	96.49	97.48
VIT_11s0016g04750.t01	Wine grape	plasma membrane	77.01	77.98
KRH03745	Soybean	plasma membrane	71.69	72.34
AT2G26650.1	Thale cress	plasma membrane	69.88	72.0
KRH56647	Soybean	plasma membrane	72.59	71.78
Solyc05g017930.1.1	Tomato	nucleus, plasma membrane	11.55	71.33
CDY35373	Canola	cytosol, plasma membrane, vacuole	69.42	71.28
Bra032037.1-P	Field mustard	cytosol	69.31	71.16
CDY55714	Canola	cytosol, plasma membrane, vacuole	69.31	71.08
GSMUA_Achr3P20680_001	Banana	cytosol, nucleus, plasma membrane	63.76	70.11
GSMUA_AchrUn_...	Banana	plasma membrane	60.82	67.89
GSMUA_Achr5P09840_001	Banana	plasma membrane	62.85	67.68
GSMUA_Achr4P09000_001	Banana	plasma membrane	41.56	65.65
GSMUA_Achr4P08990_001	Banana	cytosol, mitochondrion, plasma membrane	59.0	63.85
Zm00001d044056_P003	Maize	plasma membrane, plastid	63.99	63.7
EES03354	Sorghum	plastid	63.65	63.5
TraesCS3D01G219600.1	Wheat	plasma membrane	64.1	63.1
TraesCS3A01G233800.1	Wheat	plasma membrane	63.87	62.88
TraesCS3B01G265500.1	Wheat	plasma membrane	63.76	62.76
HORVU3Hr1G058300.1	Barley	plasma membrane	63.76	62.69
Zm00001d011473_P003	Maize	plastid	63.19	61.12
Solyc08g066990.2.1	Tomato	plasma membrane	58.66	60.09
Os01t0648000-01	Rice	plasma membrane	62.85	59.36
Solyc09g005220.1.1	Tomato	cytosol	17.89	55.24
Solyc08g016500.2.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	39.07	50.51
Solyc02g070530.2.1	Tomato	nucleus	38.73	49.71
Solyc01g010080.2.1	Tomato	plastid	33.75	47.45
Solyc03g058900.1.1	Tomato	cytosol	9.85	44.62
Solyc08g068000.1.1	Tomato	plasma membrane	32.28	44.32
Solyc01g104030.2.1	Tomato	cytosol	39.3	41.46
Solyc10g024360.1.1	Tomato	cytosol	38.73	40.67
Solyc05g051220.2.1	Tomato	cytosol	29.22	31.31
Solyc11g011500.1.1	Tomato	cytosol	28.2	30.04
Solyc03g097940.2.1	Tomato	plasma membrane	26.39	29.99

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244
GO:GO:0005249	GO:GO:0005267	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034765	GO:GO:0042391	GO:GO:0055085
GO:GO:0071805	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789
InterPro:IPR036770	InterPro:Ion_trans_dom	UniProt:K4DBM2	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027
PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088
PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF504	InterPro:RmlC-like_jellyroll	SMART:SM00100
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	EnsemblPlantsGene:Solyc12g006850.1	EnsemblPlants:Solyc12g006850.1.1
TMHMM:TMhelix	UniParc:UPI000276A964	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:1258370..1264932

Molecular Weight (calculated)

99616.4 Da

IEP (calculated)

7.558

GRAVY (calculated)

-0.080

Length

883 amino acids

Sequence
(BLAST)

001: MGDNRGLGVF GVSMCGAAQE IEQLSRESSH YSLSTGILPS LGARSNRRVK LKRFIISPYD RQYRLWETFL VVLVVYTAWV SPFEFGFLGK PAGPLAKTDN
101: VVNGFFAIDI ILTFFVAFLD RTTYLLVDEH KKIAWKYMST WFLFDVISTI PSELAVKISP KPLRQYGLFN MLRLWRLRRV SALFARLEKD RNFNYFWVRC
201: AKLVCVTLFA VHCAGCFYYL IAVHYPDPKR TWIGVAMDDF LNQSLWIRYV TSIYWSITTL TTVGYGDLHP ENTREMIFDI FYMLFNLGLT AYLIGNMTNL
301: VVHGTSRTRK FRDTIQAASS FAQRNQLPAR LQDQMLAHLC LKFRTDSEGL QQQETLESLP KAIRSSVSHF LFYSLVDKVY LFRGVSNDLL FQLVSEMKAE
401: YFPPKEDVIL QNEAPTDFYI LVTGAVDLVV LKNGVEQVVG EVRAGDLCGE IGVLCYRPQL FTVRTKRLCQ LLRMNRTTFL NIVQANVGDG TIIMNNLLQH
501: LKEMKNPIME GVLLETEHML ARGRMDLPLT LCFATLRSDD LLLHHLLKRG LDPNESDNNG RSALHIAASK GIENCVVLLL DFGADPNSRD SEGNVPLWEA
601: IMGKHESVIQ LLVDNGAKLS AGDVGHFACV AVEQNNLSLL KEIVRYGGDV TLPKINGSSA LHVAVCEGNI EIVKYLLDRG ANVDQPDEHN WTPRDLAEQQ
701: GHEDIKELFE SRVMMRTRSV DPIPEERGVR FLGRFKSEPT ISPASHGVSF LGLDGSLGRS RPRRRSNNFH NSLFGIMSAK QTNEHDVLLS ANDTNVSITT
801: TKTYAPRVIV CCPEKGDNGG KLILLPQSFK ELLQIGSSRY GISQAKVVSK DGAEIDEIEL IRDGDRLVFV RDKENNIDEA KSS

Best Arabidopsis Sequence Match ( AT2G26650.1 )
(BLAST)

001: MRGGALLCGQ VQDEIEQLSR ESSHFSLSTG ILPSLGARSN RRVKLRRFVV SPYDHKYRIW EAFLVVLVVY TAWVSPFEFG FLRKPRPPLS ITDNIVNAFF
101: AIDIIMTFFV GYLDKSTYLI VDDRKQIAFK YLRSWFLLDL VSTIPSEAAM RISSQSYGLF NMLRLWRLRR VGALFARLEK DRNFNYFWVR CAKLVCVTLF
201: AVHCAACFYY LIAARNSNPA KTWIGANVAN FLEESLWMRY VTSMYWSITT LTTVGYGDLH PVNTKEMIFD IFYMLFNLGL TAYLIGNMTN LVVHGTSRTR
301: NFRDTIQAAS NFAHRNHLPP RLQDQMLAHL CLKYRTDSEG LQQQETLDAL PKAIRSSISH FLFYSLMDKV YLFRGVSNDL LFQLVSEMKA EYFPPKEDVI
401: LQNEAPTDFY ILVNGTADLV DVDTGTESIV REVKAGDIIG EIGVLCYRPQ LFTVRTKRLC QLLRMNRTTF LNIIQANVGD GTIIMNNLLQ HLKEMNDPVM
501: TNVLLEIENM LARGKMDLPL NLCFAAIRED DLLLHQLLKR GLDPNESDNN GRTPLHIAAS KGTLNCVLLL LEYHADPNCR DAEGSVPLWE AMVEGHEKVV
601: KVLLEHGSTI DAGDVGHFAC TAAEQGNLKL LKEIVLHGGD VTRPRATGTS ALHTAVCEEN IEMVKYLLEQ GADVNKQDMH GWTPRDLAEQ QGHEDIKALF
701: REKLHERRVH IETSSSVPIL KTGIRFLGRF TSEPNIRPAS REVSFRIRET RARRKTNNFD NSLFGILANQ SVPKNGLATV DEGRTGNPVR VTISCAEKDD
801: IAGKLVLLPG SFKELLELGS NKFGIVATKV MNKDNNAEID DVDVIRDGDH LIFATDS

Arabidopsis Description

AKT1Potassium channel AKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q38998]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.