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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, mitochondrion, plasma membrane
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:mitochondrion
PProwler:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g088550.2.1
Solyc01g104030.2.1
Solyc02g070530.2.1
Solyc03g058900.1.1
Solyc05g017930.1.1
Solyc08g016500.2.1
Solyc10g024360.1.1
Solyc12g006850.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G46240.1 Solyc05g017930.1.1 AT2G26650.1 15299147
AT5G46240.1 Solyc12g006850.1.1 AT2G26650.1 15299147
AT5G46240.1 Solyc01g104030.2.1 AT4G22200.1 12034902
AT5G46240.1 Solyc10g024360.1.1 AT4G22200.1 12034902
AT5G46240.1 Solyc01g104030.2.1 AT4G22200.1 15299147
AT5G46240.1 Solyc10g024360.1.1 AT4G22200.1 15299147
AT5G46240.1 Solyc01g104030.2.1 AT4G22200.1 17085433
AT5G46240.1 Solyc10g024360.1.1 AT4G22200.1 17085433
AT5G46240.1 Solyc01g088550.2.1 AT5G41160.1 15299147
AT5G46240.1 Solyc02g070530.2.1 AT5G46240.1 11042178
AT5G46240.1 Solyc03g058900.1.1 AT5G46240.1 11042178
AT5G46240.1 Solyc08g016500.2.1 AT5G46240.1 11042178
AT5G46240.1 Solyc02g070530.2.1 AT5G46240.1 15299147
AT5G46240.1 Solyc03g058900.1.1 AT5G46240.1 15299147
AT5G46240.1 Solyc08g016500.2.1 AT5G46240.1 15299147
AT5G46240.1 Solyc02g070530.2.1 AT5G46240.1 17085433
AT5G46240.1 Solyc03g058900.1.1 AT5G46240.1 17085433
AT5G46240.1 Solyc08g016500.2.1 AT5G46240.1 17085433
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400024968 Potato cytosol, plasma membrane, vacuole 96.05 95.21
Solyc02g070530.2.1 Tomato nucleus 64.57 64.1
Os01t0756700-01 Rice plasma membrane 43.78 59.56
TraesCS3A01G294200.1 Wheat mitochondrion, plasma membrane 42.75 58.4
TraesCS3B01G328800.1 Wheat plasma membrane 42.9 58.02
TraesCS3D01G294000.1 Wheat mitochondrion, plasma membrane 42.61 57.97
CDY03233 Canola plasma membrane 55.64 57.93
Bra017567.1-P Field mustard plasma membrane 55.64 57.84
CDY35154 Canola plasma membrane 55.64 57.84
AT5G46240.1 Thale cress plasma membrane 55.49 55.98
CDY33464 Canola cytosol, plasma membrane, plastid 54.47 55.86
CDY62359 Canola cytosol, plasma membrane, plastid 54.47 55.86
KRH44805 Soybean plasma membrane 59.44 55.77
Bra025028.1-P Field mustard cytosol, endoplasmic reticulum, plasma membrane 54.32 55.71
CDX78839 Canola plasma membrane 55.64 55.56
CDX99479 Canola plasma membrane 55.64 55.47
EES01496 Sorghum mitochondrion, plasma membrane 42.9 55.28
Os01t0210700-02 Rice extracellular 48.46 55.07
Bra013296.1-P Field mustard plasma membrane 55.34 55.02
HORVU3Hr1G072850.15 Barley plastid 41.14 54.88
GSMUA_Achr10P... Banana plasma membrane 52.56 54.64
AT4G18290.2 Thale cress mitochondrion, plasma membrane 56.22 54.24
GSMUA_Achr7P09360_001 Banana plasma membrane 51.24 53.85
VIT_10s0003g03270.t01 Wine grape plasma membrane 61.93 53.48
KRH21063 Soybean plasma membrane 59.74 52.51
GSMUA_Achr6P05630_001 Banana cytosol, nucleus, plasma membrane 51.98 52.13
KRH11194 Soybean plasma membrane 58.71 51.61
CDX76529 Canola plasma membrane 52.27 50.14
Bra021012.1-P Field mustard plasma membrane 52.12 50.0
GSMUA_Achr6P26910_001 Banana endoplasmic reticulum, peroxisome, plasma membrane 52.86 49.52
GSMUA_Achr9P06470_001 Banana plasma membrane 52.27 49.45
Solyc03g058900.1.1 Tomato cytosol 14.06 49.23
GSMUA_Achr8P27260_001 Banana plasma membrane 51.1 48.14
HORVU3Hr1G028670.16 Barley plasma membrane 49.78 47.95
TraesCS3D01G148600.1 Wheat plasma membrane 50.22 47.71
Os02t0245800-01 Rice plasma membrane 49.93 47.49
GSMUA_Achr2P09100_001 Banana plasma membrane, vacuole 51.54 47.31
TraesCS3A01G132400.1 Wheat plasma membrane 49.78 47.29
TraesCS3B01G167100.1 Wheat plasma membrane 49.63 47.15
EES06576 Sorghum plasma membrane 49.49 46.36
TraesCS6A01G160500.1 Wheat plasma membrane 48.76 45.87
TraesCS6D01G152200.1 Wheat plasma membrane 48.17 45.32
TraesCS6B01G190900.1 Wheat plasma membrane 47.73 44.97
Solyc05g017930.1.1 Tomato nucleus, plasma membrane 9.37 44.76
CDY34066 Canola endoplasmic reticulum, plasma membrane 39.53 44.63
Zm00001d039386_P001 Maize plasma membrane 42.17 44.44
Zm00001d053446_P001 Maize plastid 48.17 43.4
Zm00001d016160_P001 Maize plasma membrane 44.07 43.25
Solyc01g010080.2.1 Tomato plastid 39.39 42.83
KRH58233 Soybean cytosol, extracellular, plasma membrane 13.91 42.79
Solyc09g005220.1.1 Tomato cytosol 17.28 41.26
Solyc08g068000.1.1 Tomato plasma membrane 38.65 41.06
Solyc12g006850.1.1 Tomato plasma membrane 50.51 39.07
Solyc08g066990.2.1 Tomato plasma membrane 44.07 34.92
Solyc01g104030.2.1 Tomato cytosol 42.02 34.29
Solyc10g024360.1.1 Tomato cytosol 40.41 32.82
Zm00001d012717_P002 Maize plasma membrane 46.27 30.65
Solyc05g051220.2.1 Tomato cytosol 28.84 23.91
Solyc11g011500.1.1 Tomato cytosol 27.82 22.92
Solyc03g097940.2.1 Tomato plasma membrane 25.92 22.78
Protein Annotations
Gene3D:1.10.287.70Gene3D:2.60.120.10MapMan:24.3.2.2GO:GO:0003674GO:GO:0005215GO:GO:0005216
GO:GO:0005249GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0005887GO:GO:0006810
GO:GO:0006811GO:GO:0006813GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0034220GO:GO:0042391GO:GO:0055085GO:GO:0071805InterPro:IPR000595InterPro:IPR014710
InterPro:IPR021789InterPro:Ion_trans_domUniProt:K4CJH3InterPro:KHA_domInterPro:K_chnl_volt-dep_EAG/ELK/ERGPFAM:PF00027
PFAM:PF00520PFAM:PF11834PRINTS:PR01463PFscan:PS50042PFscan:PS51490PANTHER:PTHR10217
PANTHER:PTHR10217:SF551InterPro:RmlC-like_jellyrollSMART:SM00100SUPFAM:SSF51206SUPFAM:SSF81324EnsemblPlantsGene:Solyc08g016500.2
EnsemblPlants:Solyc08g016500.2.1TMHMM:TMhelixUniParc:UPI000276B874InterPro:cNMP-bd-likeInterPro:cNMP-bd_domSEG:seg
Description
No Description!
Coordinates
chr8:+:7711206..7714499
Molecular Weight (calculated)
78718.5 Da
IEP (calculated)
6.143
GRAVY (calculated)
-0.162
Length
683 amino acids
Sequence
(BLAST)
001: MSFSYAKFSG FFSSDLLPSL GTKTNHETKL RKYIISPLDL RYRAWEMFLL LLVIYTAWIT PFEFAFLIYK IDALVIFDNI VNCFFAIDIF LNFFMAYLDK
101: ESYILVDDPK KIAIRYLSTW FIFDVCSTVP FHDFLFIDHK EGGVGFKLLS MLRLWRLRRV SALFARLEKD IRFNYFWTRY AKLISVTLFA VHCAGCFNYV
201: IADRYPDTKR TWIGAANPNF KEDSLWDRYI TSLYWSIVTL TTTGYGDLHA ENTREMLFDI FYMLFNLGLT SYIIGNMTNL VVHWTGYTRN FRDNVEAAQE
301: FAKRNQLSPR IQDQVLSHIC LKFKTESLQQ KETMNVLPKA IRSSIAHYLF LPVVQNVSLF RGVSRDLLFQ LVPEMEAEYY PPKEDVILQN ESQTDFYIVV
401: SGALDLLVDI DGREQIIGKA VAGESFGEIG VLLGRPQPYA VRTTEISQIL CLSRKTFLNI LRDNQEDERI IMRNLVQNLQ GFGGFDNMDE ESDPSSHVSK
501: QDTPTNPSDL ISINIQTLEA RTKRQVENEG ESCGHKRQTV LDHSVVPKGH IEMAPSLPER RWEEDQLDTG RVGNKSIHEV PFCSNSGNRS QTGAKGGKSI
601: KKRVTIHMRN NINSLQEQNG KLIILPDTLE ELFRMAGQRF GEYNLKKVVN AEDVEIDEID VIRDGDHLFF LSTDCSCVET STM
Best Arabidopsis Sequence Match ( AT5G46240.1 )
(BLAST)
001: MSISWTRNFF ERFCVEEYNI DTIKQSSFLS ADLLPSLGAR INQSTKLRKH IISPFNPRYR AWEMWLVLLV IYSAWICPFQ FAFITYKKDA IFIIDNIVNG
101: FFAIDIILTF FVAYLDSHSY LLVDSPKKIA IRYLSTWFAF DVCSTAPFQP LSLLFNYNGS ELGFRILSML RLWRLRRVSS LFARLEKDIR FNYFWIRCTK
201: LISVTLFAIH CAGCFNYLIA DRYPNPRKTW IGAVYPNFKE ASLWNRYVTA LYWSITTLTT TGYGDFHAEN PREMLFDIFF MMFNLGLTAY LIGNMTNLVV
301: HWTSRTRTFR DSVRAASEFA SRNQLPHDIQ DQMLSHICLK FKTEGLKQQE TLNNLPKAIR SSIANYLFFP IVHNIYLFQG VSRNFLFQLV SDIDAEYFPP
401: KEDIILQNEA PTDLYILVSG AVDFTVYVDG HDQFQGKAVI GETFGEVGVL YYRPQPFTVR TTELSQILRI SRTSLMSAMH AHADDGRVIM NNLFMKLRGQ
501: QSIAIDDSNT SGHENRDFKS MGWEEWRDSR KDGYGLDVTN PTSDTALMDA IHKEDTEMVK KILKEQKIER AKVERSSSET AGRSYANDSS KKDPYCSSSN
601: QIIKPCKREE KRVTIHMMSE SKNGKLILLP SSIEELLRLA SEKFGGCNFT KITNADNAEI DDLDVIWDGD HLYFSSN
Arabidopsis Description
KAT1At5g46240 [Source:UniProtKB/TrEMBL;Acc:Q67YG3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.