Factsheet for Solyc10g024360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010080.2.1
Solyc01g104030.2.1
Solyc02g070530.2.1
Solyc03g058900.1.1
Solyc03g096670.2.1
Solyc05g017930.1.1
Solyc05g052980.2.1
Solyc08g016500.2.1
Solyc08g068000.1.1
Solyc10g024360.1.1
Solyc12g006850.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22200.1	Solyc05g017930.1.1	AT2G26650.1	12678562
AT4G22200.1	Solyc12g006850.1.1	AT2G26650.1	12678562
AT4G22200.1	Solyc05g017930.1.1	AT2G26650.1	15299147
AT4G22200.1	Solyc12g006850.1.1	AT2G26650.1	15299147
AT4G22200.1	Solyc03g096670.2.1	AT3G11410.1	11181729
AT4G22200.1	Solyc05g052980.2.1	AT3G11410.1	11181729
AT4G22200.1	Solyc03g096670.2.1	AT3G11410.1	12034902
AT4G22200.1	Solyc05g052980.2.1	AT3G11410.1	12034902
AT4G22200.1	Solyc01g104030.2.1	AT4G22200.1	12678562
AT4G22200.1	Solyc10g024360.1.1	AT4G22200.1	12678562
AT4G22200.1	Solyc01g104030.2.1	AT4G22200.1	15299147
AT4G22200.1	Solyc10g024360.1.1	AT4G22200.1	15299147
AT4G22200.1	Solyc01g104030.2.1	AT4G22200.1	17085433
AT4G22200.1	Solyc10g024360.1.1	AT4G22200.1	17085433
AT4G22200.1	Solyc01g010080.2.1	AT4G32650.1	12678562
AT4G22200.1	Solyc08g068000.1.1	AT4G32650.1	12678562
AT4G22200.1	Solyc02g070530.2.1	AT5G46240.1	12034902
AT4G22200.1	Solyc03g058900.1.1	AT5G46240.1	12034902
AT4G22200.1	Solyc08g016500.2.1	AT5G46240.1	12034902
AT4G22200.1	Solyc02g070530.2.1	AT5G46240.1	15299147
AT4G22200.1	Solyc03g058900.1.1	AT5G46240.1	15299147
AT4G22200.1	Solyc08g016500.2.1	AT5G46240.1	15299147
AT4G22200.1	Solyc02g070530.2.1	AT5G46240.1	17085433
AT4G22200.1	Solyc03g058900.1.1	AT5G46240.1	17085433
AT4G22200.1	Solyc08g016500.2.1	AT5G46240.1	17085433

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062100	Potato	plasma membrane	94.65	94.54
Solyc01g104030.2.1	Tomato	cytosol	73.72	74.07
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	65.4	65.55
KRH44060	Soybean	cytosol	63.5	64.03
CDX79135	Canola	plasma membrane	59.93	63.96
KRH26375	Soybean	cytosol	63.02	63.78
AT4G22200.1	Thale cress	cytosol, plastid, vacuole	60.52	63.47
GSMUA_Achr6P24240_001	Banana	cytosol	56.24	59.12
Bra013599.1-P	Field mustard	cytosol	59.93	58.47
CDX82921	Canola	cytosol	59.57	58.12
GSMUA_Achr6P07280_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	55.29	56.43
KXG22060	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	46.14	55.83
Zm00001d010210_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	45.07	54.22
EES19575	Sorghum	plastid	53.03	53.29
TraesCS1D01G267800.1	Wheat	plastid	53.75	52.25
TraesCS1B01G278600.1	Wheat	plasma membrane, plastid	53.63	52.14
KXG22064	Sorghum	plastid	52.08	52.02
TraesCS1A01G267900.1	Wheat	plastid	53.63	51.96
Os05t0428700-01	Rice	cytosol, plastid	34.72	51.59
TraesCS6B01G081300.1	Wheat	plastid	50.65	50.96
HORVU1Hr1G065250.2	Barley	plastid	53.63	50.79
KXG22062	Sorghum	plastid	9.39	49.69
Zm00001d038252_P001	Maize	plastid	52.56	47.32
Zm00001d010209_P001	Maize	plastid	7.73	46.43
Solyc05g017930.1.1	Tomato	nucleus, plasma membrane	7.85	46.15
Solyc02g070530.2.1	Tomato	nucleus	33.65	41.13
Solyc08g016500.2.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	32.82	40.41
Solyc01g010080.2.1	Tomato	plastid	29.73	39.81
Solyc12g006850.1.1	Tomato	plasma membrane	40.67	38.73
Solyc08g068000.1.1	Tomato	plasma membrane	29.49	38.57
Solyc09g005220.1.1	Tomato	cytosol	12.6	37.06
Solyc08g066990.2.1	Tomato	plasma membrane	37.81	36.89
Solyc03g058900.1.1	Tomato	cytosol	7.49	32.31
Solyc11g011500.1.1	Tomato	cytosol	26.87	27.26
Solyc03g097940.2.1	Tomato	plasma membrane	25.09	27.16
Solyc05g051220.2.1	Tomato	cytosol	26.28	26.82

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244	GO:GO:0005249
GO:GO:0005267	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0034765	GO:GO:0042391	GO:GO:0055085	GO:GO:0071805
InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770
InterPro:Ion_trans_dom	UniProt:K4CZ55	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027	PFAM:PF00520
PFAM:PF11834	PFAM:PF12796	PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088
PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF493	InterPro:RmlC-like_jellyroll	SMART:SM00100
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	EnsemblPlantsGene:Solyc10g024360.1	EnsemblPlants:Solyc10g024360.1.1
TMHMM:TMhelix	UniParc:UPI000276ABAF	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	:	:

Description

No Description!

Coordinates

chr10:+:13708914..13715426

Molecular Weight (calculated)

96964.4 Da

IEP (calculated)

7.485

GRAVY (calculated)

-0.231

Length

841 amino acids

Sequence
(BLAST)

001: MMNMEVKYSL HGFYNRNMSD MNGEKIQTNE DMHNNKKKKN NERVGNSGLG NMSFHNLSKL IVPPLGSSGY NQNQTDLHKG NTISPINSTY RCWETLMVVL
101: VAYCAWVCPF EMAFMNLNPN KKLYIADNIV NLFFAADIIL TFSVAYIDST SQLLVRDRKK IATRYVSTWF LMDVGSTIPF DLVAMFFTGK HQVGISYSVL
201: GVLRFWRLRK VKQFFTRLEK DMRFSYFWIR CARLLFVTLF SVHCAGCLYY LLADRYPHQG NTWLGSVNPK FRETSLSIRY ISAIYWSITT MTTVGYGDLH
301: AVNTVEMIFI IFYMLFNLGL TAYIIGNMTN LVVEGTSRTM EFRNSIQSAS NFVCRNHLPP RLKEQILAYM CLRFKAESLN QQQLIEQLPK TICKSIRHHL
401: FLPTVEKVYL FKGISREIRL HLVADMKADY IPPREDVIMQ NESPDEVYII VSGEVEMIDS EMENEQIVWT LRCGDMFGEV GAFCCRPQSY TYRTRTLSQL
501: LKIRTSSLIE AMKSRQEDNM TMMKNFLQHH KKLKDLRLTD LFVDVGDKDS DPNMSINLLT VSSTGNATFL DELLKARLDP NICDSKGRTP LHIAASKGHE
601: ECVMVLLRHG CNIHLQDVNG DTALWEAITA KQHPIFEILY HWACISDPYV SGDLLCKAAR RNELTIMKEL LKHGLLVNSK DRHRSTAMHI AIEENHLEMV
701: KLLLLNGDEI DDTLKDKLSS MNLSEILQKP DVGHRIIISD TMDEVDHKWH EQEQKYDFES HTDQCAFRVS IYRGHPEFRR RSQCNEPGRL IKLPDSLEKL
801: KGIAGHKFGF DAKDALVTNE EGAEIDSVEV IRDNDKLYIY S

Best Arabidopsis Sequence Match ( AT4G22200.1 )
(BLAST)

001: MDLKYSASHC NLSSDMKLRR FHQHRGKGRE EEYDASSLSL NNLSKLILPP LGVASYNQNH IRSSGWIISP MDSRYRCWEF YMVLLVAYSA WVYPFEVAFL
101: NSSPKRNLCI ADNIVDLFFA VDIVLTFFVA YIDERTQLLV REPKQIAVRY LSTWFLMDVA STIPFDAIGY LITGTSTLNI TCNLLGLLRF WRLRRVKHLF
201: TRLEKDIRYS YFWIRCFRLL SVTLFLVHCA GCSYYLIADR YPHQGKTWTD AIPNFTETSL SIRYIAAIYW SITTMTTVGY GDLHASNTIE MVFITVYMLF
301: NLGLTAYLIG NMTNLVVEGT RRTMEFRNSI EAASNFVNRN RLPPRLKDQI LAYMCLRFKA ESLNQQHLID QLPKSIYKSI CQHLFLPSVE KVYLFKGVSR
401: EILLLLVSKM KAEYIPPRED VIMQNEAPDD VYIIVSGEVE IIDSEMERES VLGTLRCGDI FGEVGALCCR PQSYTFQTKS LSQLLRLKTS FLIETMQIKQ
501: QDNATMLKNF LQHHKKLSNL DIGDLKAQQN GENTDVVPPN IASNLIAVVT TGNAALLDEL LKAKLSPDIT DSKGKTPLHV AASRGYEDCV LVLLKHGCNI
601: HIRDVNGNSA LWEAIISKHY EIFRILYHFA AISDPHIAGD LLCEAAKQNN VEVMKALLKQ GLNVDTEDHH GVTALQVAMA EDQMDMVNLL ATNGADVVCV
701: NTHNEFTPLE KLRVVEEEEE EERGRVSIYR GHPLERRERS CNEAGKLILL PPSLDDLKKI AGEKFGFDGS ETMVTNEDGA EIDSIEVIRD NDKLYFVVNK
801: II

Arabidopsis Description

AKT2Potassium channel AKT2/3 [Source:UniProtKB/Swiss-Prot;Acc:Q38898]
SUBAcon: [cytosol,vacuole,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.