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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • vacuole 1
  • plasma membrane 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plasma membrane, plastid, vacuole
ChloroP:plastid
MultiLoc:vacuole
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G065250.2
HORVU3Hr1G028670.16
HORVU3Hr1G058300.1
HORVU3Hr1G068040.1
HORVU3Hr1G072850.15
HORVU3Hr1G085930.3
HORVU4Hr1G060370.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G22200.1 HORVU3Hr1G058300.1 AT2G26650.1 12678562
AT4G22200.1 HORVU3Hr1G058300.1 AT2G26650.1 15299147
AT4G22200.1 HORVU3Hr1G085930.3 AT3G11410.1 11181729
AT4G22200.1 HORVU4Hr1G060370.1 AT3G11410.1 11181729
AT4G22200.1 HORVU3Hr1G085930.3 AT3G11410.1 12034902
AT4G22200.1 HORVU4Hr1G060370.1 AT3G11410.1 12034902
AT4G22200.1 HORVU1Hr1G065250.2 AT4G22200.1 12678562
AT4G22200.1 HORVU1Hr1G065250.2 AT4G22200.1 15299147
AT4G22200.1 HORVU1Hr1G065250.2 AT4G22200.1 17085433
AT4G22200.1 HORVU3Hr1G068040.1 AT4G32650.1 12678562
AT4G22200.1 HORVU3Hr1G028670.16 AT5G46240.1 12034902
AT4G22200.1 HORVU3Hr1G072850.15 AT5G46240.1 12034902
AT4G22200.1 HORVU3Hr1G028670.16 AT5G46240.1 15299147
AT4G22200.1 HORVU3Hr1G072850.15 AT5G46240.1 15299147
AT4G22200.1 HORVU3Hr1G028670.16 AT5G46240.1 17085433
AT4G22200.1 HORVU3Hr1G072850.15 AT5G46240.1 17085433
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G267800.1 Wheat plastid 89.19 91.56
TraesCS1B01G278600.1 Wheat plasma membrane, plastid 88.74 91.1
TraesCS1A01G267900.1 Wheat plastid 87.95 89.98
TraesCS6B01G081300.1 Wheat plastid 78.38 83.25
KXG22060 Sorghum cytosol, endoplasmic reticulum, plasma membrane 59.91 76.55
Os05t0428700-01 Rice cytosol, plastid 48.42 75.97
Zm00001d010210_P001 Maize cytosol, endoplasmic reticulum, plasma membrane 59.35 75.39
EES19575 Sorghum plastid 68.92 73.12
KXG22064 Sorghum plastid 68.58 72.33
Zm00001d010209_P001 Maize plastid 11.26 71.43
KXG22062 Sorghum plastid 12.39 69.18
Zm00001d038252_P001 Maize plastid 70.27 66.81
GSMUA_Achr6P24240_001 Banana cytosol 58.22 64.62
GSMUA_Achr6P07280_001 Banana cytosol, mitochondrion, plasma membrane, plastid 57.43 61.89
VIT_12s0034g02240.t01 Wine grape cytosol, mitochondrion, plasma membrane 56.19 59.48
KRH26375 Soybean cytosol 55.52 59.33
CDX79135 Canola plasma membrane 52.36 59.01
KRH44060 Soybean cytosol 54.95 58.51
AT4G22200.1 Thale cress cytosol, plastid, vacuole 52.03 57.61
PGSC0003DMT400061090 Potato cytosol 51.69 55.7
Solyc01g104030.2.1 Tomato cytosol 52.25 55.44
PGSC0003DMT400062100 Potato plasma membrane 51.46 54.28
Bra013599.1-P Field mustard cytosol 52.36 53.94
Solyc10g024360.1.1 Tomato cytosol 50.79 53.63
CDX82921 Canola cytosol 52.03 53.6
HORVU3Hr1G072850.15 Barley plastid 25.79 44.73
HORVU3Hr1G068040.1 Barley plasma membrane 20.95 43.46
HORVU3Hr1G028670.16 Barley plasma membrane 30.97 38.79
HORVU3Hr1G058300.1 Barley plasma membrane 39.19 38.75
HORVU2Hr1G083820.1 Barley cytosol 31.53 38.73
HORVU7Hr1G040880.7 Barley cytosol, plasma membrane 26.46 30.36
HORVU7Hr1G040990.20 Barley endoplasmic reticulum, plasma membrane 26.58 29.65
HORVU2Hr1G077680.12 Barley cytosol 25.34 29.34
HORVU7Hr1G040970.5 Barley cytosol 26.46 24.63
Protein Annotations
Gene3D:1.10.287.70Gene3D:1.25.40.20Gene3D:2.60.120.10MapMan:24.3.2.2UniProt:A0A287FZR5InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_domInterPro:Ankyrin_rpt-contain_sfGO:GO:0003674GO:GO:0005215GO:GO:0005216GO:GO:0005244
GO:GO:0005249GO:GO:0005267GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0006810GO:GO:0006811
GO:GO:0006813GO:GO:0008150GO:GO:0009506GO:GO:0009719GO:GO:0009737GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0034765GO:GO:0042391GO:GO:0042802GO:GO:0055085
GO:GO:0071805EnsemblPlantsGene:HORVU1Hr1G065250EnsemblPlants:HORVU1Hr1G065250.2InterPro:IPR000595InterPro:IPR002110InterPro:IPR014710
InterPro:IPR020683InterPro:IPR021789InterPro:IPR036770InterPro:Ion_trans_domInterPro:KHA_domInterPro:K_chnl_volt-dep_EAG/ELK/ERG
PFAM:PF00027PFAM:PF00520PFAM:PF11834PFAM:PF12796PFAM:PF13857PRINTS:PR01463
PFscan:PS50042PFscan:PS50088PFscan:PS50297PFscan:PS51490PANTHER:PTHR10217PANTHER:PTHR10217:SF493
InterPro:RmlC-like_jellyrollSMART:SM00100SMART:SM00248SUPFAM:SSF48403SUPFAM:SSF51206SUPFAM:SSF81324
TMHMM:TMhelixUniParc:UPI000B471FA5InterPro:cNMP-bd-likeInterPro:cNMP-bd_domSEG:seg:
Description
No Description!
Coordinates
chrchr1H:+:466760728..466767367
Molecular Weight (calculated)
98571.8 Da
IEP (calculated)
7.177
GRAVY (calculated)
-0.032
Length
888 amino acids
Sequence
(BLAST)
001: MKIPSFQSKS SSGGASGSST GFGSGSFNLR NLSKLMLPPL GHSLSQSTSG TDERVVSPLD SRYRCWETFM VILVAYSAWV YPFEVAFMEA SPKGGLEVAD
101: MVVDIFFAVD IALTFFVAYI DSRTQLLVRD RKRITFRYLS TFFIMDVAST IPYQGIAYLV NGEVREGMVY SLLGLLRLWR LRKVKQFFTR LEKDIRFSYF
201: WVRCARLIAV TLFLVHCAGC LYYMLADRYP DRDKTWIGAV IPNFRQESLW IRYISSIYWS ITTMTTVGYG DLHAQNNLEM IFNIFYMLFN LGLTAYLIGN
301: MTNLVVEGTR RTMEFRNSIR AASNFVCRNH LPPRLQQQIL AYMCLKFRAE SLNQQQLMDQ LPKSICKSIC EHLFLPVVKD VYLFKGISRD AQLLLVTKTK
401: PEYIPPKEDV IVQNEAADDV YIIVSGEVEV IYFNGEREEV VGKLGTLDIF GEVSALSDRP QTFTFRTRTL SQLLRLKQAT LREVMQSKPD DSALIVRNFL
501: KHQIEVHDMK DLLGESIGAA GSGNIVPCNL LTVAATGNGG FLGDLLKVGM DPDVGDSKGR TALHIAASKG YDDCVQALLM HGCNVNIKGG SNTQIIYSTF
601: QRDQALLTIR DGCMQTADAQ GNTALWQAIA ARHHKVFSNL YHAARATNPR AGGDLLCLAA RRGDLDTLRE LLKHGLDVDS EGHDGATALR VALSEGQADV
701: ARFLVMNGAS VDKAGLDDDG SAPQQTTLPA AELRELVKRR EVGHPITIYD YDSPPAVCSS SGELRQGRFP IPGSARSSDS AHWPRVSIYK GHPFVRTHSS
801: EAGKLVNLPA TMEELKTVIG EKLKVDPEEA LVVNHEGAEI DSVDVIRDND KLFIVTQEHM RMLASMDSAA ALPHTLSVGS SVSVASVI
Best Arabidopsis Sequence Match ( AT4G22200.1 )
(BLAST)
001: MDLKYSASHC NLSSDMKLRR FHQHRGKGRE EEYDASSLSL NNLSKLILPP LGVASYNQNH IRSSGWIISP MDSRYRCWEF YMVLLVAYSA WVYPFEVAFL
101: NSSPKRNLCI ADNIVDLFFA VDIVLTFFVA YIDERTQLLV REPKQIAVRY LSTWFLMDVA STIPFDAIGY LITGTSTLNI TCNLLGLLRF WRLRRVKHLF
201: TRLEKDIRYS YFWIRCFRLL SVTLFLVHCA GCSYYLIADR YPHQGKTWTD AIPNFTETSL SIRYIAAIYW SITTMTTVGY GDLHASNTIE MVFITVYMLF
301: NLGLTAYLIG NMTNLVVEGT RRTMEFRNSI EAASNFVNRN RLPPRLKDQI LAYMCLRFKA ESLNQQHLID QLPKSIYKSI CQHLFLPSVE KVYLFKGVSR
401: EILLLLVSKM KAEYIPPRED VIMQNEAPDD VYIIVSGEVE IIDSEMERES VLGTLRCGDI FGEVGALCCR PQSYTFQTKS LSQLLRLKTS FLIETMQIKQ
501: QDNATMLKNF LQHHKKLSNL DIGDLKAQQN GENTDVVPPN IASNLIAVVT TGNAALLDEL LKAKLSPDIT DSKGKTPLHV AASRGYEDCV LVLLKHGCNI
601: HIRDVNGNSA LWEAIISKHY EIFRILYHFA AISDPHIAGD LLCEAAKQNN VEVMKALLKQ GLNVDTEDHH GVTALQVAMA EDQMDMVNLL ATNGADVVCV
701: NTHNEFTPLE KLRVVEEEEE EERGRVSIYR GHPLERRERS CNEAGKLILL PPSLDDLKKI AGEKFGFDGS ETMVTNEDGA EIDSIEVIRD NDKLYFVVNK
801: II
Arabidopsis Description
AKT2Potassium channel AKT2/3 [Source:UniProtKB/Swiss-Prot;Acc:Q38898]
SUBAcon: [plastid,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.