CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03745
KRH11194
KRH21063
KRH26375
KRH44060
KRH44805
KRH52547
KRH56647
KRH58233
KRH61886
KRH73525

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22200.1	KRH03745	AT2G26650.1	12678562
AT4G22200.1	KRH56647	AT2G26650.1	12678562
AT4G22200.1	KRH03745	AT2G26650.1	15299147
AT4G22200.1	KRH56647	AT2G26650.1	15299147
AT4G22200.1	KRH73525	AT3G11410.1	11181729
AT4G22200.1	KRH73525	AT3G11410.1	12034902
AT4G22200.1	KRH26375	AT4G22200.1	12678562
AT4G22200.1	KRH44060	AT4G22200.1	12678562
AT4G22200.1	KRH26375	AT4G22200.1	15299147
AT4G22200.1	KRH44060	AT4G22200.1	15299147
AT4G22200.1	KRH26375	AT4G22200.1	17085433
AT4G22200.1	KRH44060	AT4G22200.1	17085433
AT4G22200.1	KRH52547	AT4G32650.1	12678562
AT4G22200.1	KRH61886	AT4G32650.1	12678562
AT4G22200.1	KRH11194	AT5G46240.1	12034902
AT4G22200.1	KRH21063	AT5G46240.1	12034902
AT4G22200.1	KRH44805	AT5G46240.1	12034902
AT4G22200.1	KRH58233	AT5G46240.1	12034902
AT4G22200.1	KRH11194	AT5G46240.1	15299147
AT4G22200.1	KRH21063	AT5G46240.1	15299147
AT4G22200.1	KRH44805	AT5G46240.1	15299147
AT4G22200.1	KRH58233	AT5G46240.1	15299147
AT4G22200.1	KRH11194	AT5G46240.1	17085433
AT4G22200.1	KRH21063	AT5G46240.1	17085433
AT4G22200.1	KRH44805	AT5G46240.1	17085433
AT4G22200.1	KRH58233	AT5G46240.1	17085433

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26375	Soybean	cytosol	92.69	93.02
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	73.5	73.06
AT4G22200.1	Thale cress	cytosol, plastid, vacuole	65.83	68.45
CDX79135	Canola	plasma membrane	63.55	67.26
Solyc01g104030.2.1	Tomato	cytosol	65.35	65.11
PGSC0003DMT400061090	Potato	cytosol	64.15	64.93
PGSC0003DMT400062100	Potato	plasma membrane	64.51	63.9
Solyc10g024360.1.1	Tomato	cytosol	64.03	63.5
GSMUA_Achr6P24240_001	Banana	cytosol	59.83	62.38
Bra013599.1-P	Field mustard	cytosol	63.55	61.48
CDX82921	Canola	cytosol	63.31	61.25
GSMUA_Achr6P07280_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	59.23	59.95
KXG22060	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	49.4	59.28
Zm00001d010210_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	48.08	57.37
TraesCS1D01G267800.1	Wheat	plastid	59.11	56.99
EES19575	Sorghum	plastid	56.83	56.63
TraesCS1B01G278600.1	Wheat	plasma membrane, plastid	58.63	56.53
KXG22064	Sorghum	plastid	56.83	56.29
TraesCS1A01G267900.1	Wheat	plastid	58.27	55.99
HORVU1Hr1G065250.2	Barley	plastid	58.51	54.95
KXG22062	Sorghum	plastid	10.43	54.72
Os05t0428700-01	Rice	cytosol, plastid	37.05	54.59
TraesCS6B01G081300.1	Wheat	plastid	54.68	54.55
Zm00001d010209_P001	Maize	plastid	8.99	53.57
Zm00001d038252_P001	Maize	plastid	57.55	51.39
KRH44805	Soybean	plasma membrane	35.73	40.93
KRH03745	Soybean	plasma membrane	40.65	38.74
KRH21063	Soybean	plasma membrane	35.73	38.35
KRH56647	Soybean	plasma membrane	40.89	38.19
KRH61886	Soybean	plasma membrane	28.42	37.92
KRH11194	Soybean	plasma membrane	35.01	37.58
KRH05105	Soybean	cytosol, plasma membrane, vacuole	38.01	36.61
KRH16013	Soybean	plasma membrane	38.01	36.23
KRH61812	Soybean	plasma membrane	37.41	35.54
KRH52490	Soybean	plasma membrane	36.69	34.81
KRH52547	Soybean	cytosol	24.7	34.68
KRH58233	Soybean	cytosol, extracellular, plasma membrane	8.51	31.98
KRH17312	Soybean	cytosol, plastid	29.62	29.06
KRH72964	Soybean	cytosol	29.38	28.86
KRH60563	Soybean	mitochondrion, plasma membrane	25.66	27.47

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	EntrezGene:100798422	Gene3D:2.60.120.10	MapMan:24.3.2.2	EMBL:ACUP02004908
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_08G187600	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005244	GO:GO:0005249	GO:GO:0005267	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006811
GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034765
GO:GO:0042391	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710
InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom	UniProt:K7L7I9	InterPro:KHA_dom
EnsemblPlants:KRH44060	ProteinID:KRH44060	ProteinID:KRH44060.1	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027	PFAM:PF00520
PFAM:PF11834	PFAM:PF12796	PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088
PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF493	InterPro:RmlC-like_jellyroll	SMART:SM00100
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI0002339147
InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:15040800..15047536

Molecular Weight (calculated)

95465.0 Da

IEP (calculated)

7.359

GRAVY (calculated)

-0.105

Length

834 amino acids

Sequence
(BLAST)

001: MEGMNFSSYN PQLASSLKKS YSKQEHDHSV ERNHLNEEDH MSPSFNLRNI SKLILPPLGV SSQNPVNSKG WIISPMDSRY RCWESFMVLL VAYSAWVYPF
101: EVAFMHKSSN KEIYIVDTVV DLFFGIDIVL TFFVAYIDRT THLLVRDKKK IVVRYLSTWF VMDLASTIPY EAIGYLFTGR QKVGLPYFLL GLLRFWRIRR
201: VKQYFTRLEK DIRFSYFWVR CARLLSVTLF SVHCAGCLYY MLADRYPHQG KTWIGAVNPN FRETSLRIRY ISAMYWSITT MTTVGYGDLH AVNTIEMIFI
301: IFYMLFNLGL TAYLIGNMTN LVVEGTRRTM EFRNSIEAAS NFVCRNRLPP RLKEQILAYM CLRFKAESLN QHQLIEQLPK SICKSICQHL FFATVEKVYL
401: FKGVSKEIIL SLVAKMKAEY IPPREDVIMQ NEAPDDVYII VSGEVEILDT ETEKERILGT LHTGEMFGEF GALCCRPQSL TYRTKTLTQL LRLKTNTLLE
501: AMQIKREDNI QILKNFLQHF KQVKDLSIKD LMVENVEEED PNMAVNLLTV ASTGNAAFLE ELLRAGLDPD IGDSKGKTPL HIAASNGHEG CVKVLLKHAC
601: NMHIKDMNGN TALWDAIASK HYSIFRILFQ LSALSDPNIA GDLMCTAAKR NELTVMTDLL RQGLNVDSKD HRDTTAIQIA MAENHVDMVQ LLVMNGADVS
701: DVHNHEFCSS TLNEMLQKRE IGHLINVTEV MLSEVVLKGR HQEQEHNGGR SNSGLKFPRV SIYRGHPVVR REKCSMEAGK LIRLPDSIEE LKTIAGEKFG
801: FDAKDAMVTN EEGAEIDSVD VIRDNDKLFF CWIS

Best Arabidopsis Sequence Match ( AT4G22200.1 )
(BLAST)

001: MDLKYSASHC NLSSDMKLRR FHQHRGKGRE EEYDASSLSL NNLSKLILPP LGVASYNQNH IRSSGWIISP MDSRYRCWEF YMVLLVAYSA WVYPFEVAFL
101: NSSPKRNLCI ADNIVDLFFA VDIVLTFFVA YIDERTQLLV REPKQIAVRY LSTWFLMDVA STIPFDAIGY LITGTSTLNI TCNLLGLLRF WRLRRVKHLF
201: TRLEKDIRYS YFWIRCFRLL SVTLFLVHCA GCSYYLIADR YPHQGKTWTD AIPNFTETSL SIRYIAAIYW SITTMTTVGY GDLHASNTIE MVFITVYMLF
301: NLGLTAYLIG NMTNLVVEGT RRTMEFRNSI EAASNFVNRN RLPPRLKDQI LAYMCLRFKA ESLNQQHLID QLPKSIYKSI CQHLFLPSVE KVYLFKGVSR
401: EILLLLVSKM KAEYIPPRED VIMQNEAPDD VYIIVSGEVE IIDSEMERES VLGTLRCGDI FGEVGALCCR PQSYTFQTKS LSQLLRLKTS FLIETMQIKQ
501: QDNATMLKNF LQHHKKLSNL DIGDLKAQQN GENTDVVPPN IASNLIAVVT TGNAALLDEL LKAKLSPDIT DSKGKTPLHV AASRGYEDCV LVLLKHGCNI
601: HIRDVNGNSA LWEAIISKHY EIFRILYHFA AISDPHIAGD LLCEAAKQNN VEVMKALLKQ GLNVDTEDHH GVTALQVAMA EDQMDMVNLL ATNGADVVCV
701: NTHNEFTPLE KLRVVEEEEE EERGRVSIYR GHPLERRERS CNEAGKLILL PPSLDDLKKI AGEKFGFDGS ETMVTNEDGA EIDSIEVIRD NDKLYFVVNK
801: II

Arabidopsis Description

AKT2Potassium channel AKT2/3 [Source:UniProtKB/Swiss-Prot;Acc:Q38898]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.