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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 4
  • cytosol 2
  • mitochondrion 1
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G050110.1
HORVU1Hr1G065250.2
HORVU1Hr1G070420.1
HORVU2Hr1G060350.5
HORVU3Hr1G030210.5
HORVU3Hr1G039010.1
HORVU3Hr1G040680.1
HORVU3Hr1G058300.1
HORVU3Hr1G088100.1
HORVU3Hr1G107030.1
HORVU4Hr1G055220.1
HORVU4Hr1G060100.1
HORVU4Hr1G060110.1
HORVU5Hr1G116650.1
HORVU6Hr1G034070.2
HORVU7Hr1G088140.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G07430.1 HORVU2Hr1G060350.5 AT1G30270.1 17898163
AT1G07430.1 HORVU3Hr1G058300.1 AT2G26650.1 17898163
AT1G07430.1 HORVU5Hr1G116650.1 AT3G06610.1 21798944
AT3G11410.1 HORVU3Hr1G030210.5 AT1G73000.1 19407142
AT3G11410.1 HORVU3Hr1G040680.1 AT1G73000.1 19407142
AT3G11410.1 HORVU3Hr1G107030.1 AT1G73000.1 19407142
AT3G11410.1 HORVU4Hr1G060100.1 AT1G73000.1 19407142
AT3G11410.1 HORVU4Hr1G060110.1 AT1G73000.1 19407142
AT3G11410.1 HORVU7Hr1G088140.2 AT1G73000.1 19407142
AT3G11410.1 HORVU3Hr1G030210.5 AT2G26040.1 19407142
AT3G11410.1 HORVU3Hr1G040680.1 AT2G26040.1 19407142
AT3G11410.1 HORVU3Hr1G107030.1 AT2G26040.1 19407142
AT3G11410.1 HORVU4Hr1G060100.1 AT2G26040.1 19407142
AT3G11410.1 HORVU4Hr1G060110.1 AT2G26040.1 19407142
AT3G11410.1 HORVU7Hr1G088140.2 AT2G26040.1 19407142
AT3G11410.1 HORVU6Hr1G034070.2 AT2G33610.1 19033529
AT3G11410.1 HORVU1Hr1G070420.1 AT2G38310.1 19407142
AT3G11410.1 HORVU3Hr1G039010.1 AT2G38310.1 19407142
AT3G11410.1 HORVU3Hr1G088100.1 AT2G38310.1 19407142
AT3G11410.1 HORVU4Hr1G055220.1 AT2G38310.1 19407142
AT3G11410.1 HORVU1Hr1G050110.1 AT4G17870.1 19407142
AT3G11410.1 HORVU1Hr1G065250.2 AT4G22200.1 11181729
AT3G11410.1 HORVU1Hr1G065250.2 AT4G22200.1 12034902
AT3G11410.1 HORVU1Hr1G050110.1 AT5G46790.1 19407142
AT5G59220.1 HORVU1Hr1G070420.1 AT2G38310.1 19407142
AT5G59220.1 HORVU3Hr1G039010.1 AT2G38310.1 19407142
AT5G59220.1 HORVU3Hr1G088100.1 AT2G38310.1 19407142
AT5G59220.1 HORVU4Hr1G055220.1 AT2G38310.1 19407142
AT5G59220.1 HORVU1Hr1G050110.1 AT4G17870.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G362200.1 Wheat nucleus, plastid 94.66 95.14
TraesCS3D01G355900.1 Wheat plastid 95.42 94.46
TraesCS3B01G394600.3 Wheat plastid 96.18 88.32
EES01744 Sorghum plastid 77.1 73.54
Zm00001d042886_P001 Maize nucleus 75.57 72.79
Zm00001d012401_P001 Maize cytosol, mitochondrion, nucleus, plastid 75.57 71.91
Os01t0846300-01 Rice cytosol, mitochondrion, nucleus, plastid 73.54 69.81
GSMUA_AchrUn_... Banana cytosol 47.58 66.08
CDY18067 Canola cytosol 9.16 61.02
GSMUA_Achr6P15180_001 Banana cytosol 56.23 59.73
CDY67257 Canola nucleus 50.64 53.64
CDY67227 Canola cytosol 50.38 53.37
AT2G29380.1 Thale cress nucleus 48.85 53.04
HORVU4Hr1G060370.1 Barley nucleus 53.94 53.0
Bra002038.1-P Field mustard nucleus 50.64 52.37
KRH15068 Soybean cytosol 51.91 51.0
Solyc05g052980.2.1 Tomato nucleus 52.93 50.86
CDY40181 Canola cytosol 47.33 50.82
Bra018398.1-P Field mustard cytosol 47.33 50.82
CDY45436 Canola cytosol 47.07 50.55
VIT_06s0004g05460.t01 Wine grape nucleus 50.38 50.38
AT3G11410.1 Thale cress cytosol 51.15 50.38
KRH73067 Soybean cytosol 52.16 50.37
KRG97855 Soybean cytosol 50.64 49.75
VIT_13s0019g02200.t01 Wine grape plastid 50.64 49.75
CDY01017 Canola nucleus 49.62 49.62
CDY08530 Canola nucleus 49.36 49.36
Solyc03g096670.2.1 Tomato nucleus 50.89 49.26
KRH31027 Soybean cytosol 49.87 48.88
Bra034845.1-P Field mustard nucleus 49.62 48.87
PGSC0003DMT400069947 Potato cytosol 51.91 48.8
CDY06705 Canola nucleus 48.35 48.72
PGSC0003DMT400043146 Potato nucleus 50.13 48.05
PGSC0003DMT400077989 Potato cytosol 49.62 47.56
Solyc06g076400.2.1 Tomato nucleus 49.36 47.32
HORVU3Hr1G067360.1 Barley cytosol, peroxisome 6.11 47.06
AT5G59220.1 Thale cress nucleus 48.85 46.49
Bra002594.1-P Field mustard plastid 48.6 46.36
CDX80307 Canola nucleus, plastid 46.06 45.71
CDY10275 Canola nucleus 49.87 45.58
CDY33008 Canola nucleus, plastid 45.8 45.57
Bra015579.1-P Field mustard nucleus 49.11 45.31
HORVU7Hr1G008370.1 Barley cytosol, peroxisome 11.96 44.76
AT1G07430.1 Thale cress nucleus 50.13 44.57
KRH73525 Soybean cytosol, mitochondrion, peroxisome, plastid 11.96 44.34
Bra031574.1-P Field mustard nucleus 48.6 43.81
HORVU3Hr1G059170.2 Barley cytosol, nucleus 44.27 43.61
CDY06259 Canola nucleus 48.35 43.58
HORVU1Hr1G090360.2 Barley cytosol, mitochondrion, nucleus 42.75 42.53
HORVU7Hr1G029040.1 Barley cytosol, peroxisome 30.79 41.3
Bra030455.1-P Field mustard cytosol 16.03 39.62
HORVU3Hr1G067380.4 Barley cytosol 33.33 38.87
HORVU7Hr1G008520.2 Barley cytosol 16.03 37.95
HORVU2Hr1G000090.2 Barley cytosol 43.0 37.22
HORVU1Hr1G080290.6 Barley cytosol 35.62 36.46
HORVU7Hr1G008470.2 Barley cytosol 33.08 34.95
CDY36606 Canola nucleus 21.63 34.0
HORVU1Hr1G094840.9 Barley extracellular, mitochondrion 36.13 33.97
HORVU7Hr1G008560.2 Barley mitochondrion 20.1 32.51
HORVU3Hr1G050340.1 Barley plasma membrane, vacuole 37.66 31.03
HORVU7Hr1G008550.1 Barley cytosol 16.79 29.2
PGSC0003DMT400049695 Potato extracellular 4.07 14.55
HORVU7Hr1G093200.5 Barley endoplasmic reticulum, plastid 24.43 8.71
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:18.4.24.2.1Gene3D:3.60.40.10GO:GO:0003674GO:GO:0003824
GO:GO:0004721GO:GO:0004722GO:GO:0005488GO:GO:0006464GO:GO:0006470GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0019538GO:GO:0043169GO:GO:0046872
EnsemblPlantsGene:HORVU3Hr1G085930EnsemblPlants:HORVU3Hr1G085930.3InterPro:IPR001932InterPro:IPR036457UniProt:M0ZC70PFAM:PF00481
InterPro:PP2CInterPro:PP2C_BSInterPro:PPM-type_dom_sfInterPro:PPM-type_phosphatase_domScanProsite:PS01032PFscan:PS51746
PANTHER:PTHR13832PANTHER:PTHR13832:SF532SMART:SM00332SUPFAM:SSF81606TMHMM:TMhelixUniParc:UPI000296E011
SEG:seg:::::
Description
No Description!
Coordinates
chrchr3H:+:614881041..614883250
Molecular Weight (calculated)
41868.3 Da
IEP (calculated)
5.962
GRAVY (calculated)
-0.291
Length
393 amino acids
Sequence
(BLAST)
001: MAEICCQEAK SPPATAATVA TVSASAAAAA AVASSVMDRR RRRLELKRFR LATDLEQSAA EYAGARKRPR IPRTVSGPCP DAASASENTE RCPRYGFSSV
101: CGRRREMEDA VSIRPGFLPG PGKSHFFGVF DGHGCSHVAT TCQELMHEAV AEEHDKAEEP VWKEVMERSF ARLDERAANW ATTRSSEEPA CRCEQKMPSR
201: CDHVGSTAVV AVVNPTQIVV ANAGDSRAVL SRAGVPVALS VDHKPDRPDE LERIQAAGGR VIYWDGARVL GVLAMSRAIG DGYLKPFVTA EPEVTVTERS
301: DADDCLILAS DGLWDVVTNE MACDVARACF RSNGPPGPPQ AQPGGEAKTS EGVSKAESDQ ACSDAAMLLA KLALARGSSD NVSVVVVDLR RGS
Best Arabidopsis Sequence Match ( AT1G07430.1 )
(BLAST)
001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA
Arabidopsis Description
AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.