CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90240
CDY05281
CDY24678
CDY26276
CDY34938
CDY34941
CDY35373
CDY49976
CDY55714
CDY63182

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07430.1	CDX90240	AT1G30270.1	17898163
AT1G07430.1	CDY26276	AT1G30270.1	17898163
AT1G07430.1	CDY49976	AT1G30270.1	17898163
AT1G07430.1	CDY63182	AT1G30270.1	17898163
AT1G07430.1	CDY35373	AT2G26650.1	17898163
AT1G07430.1	CDY55714	AT2G26650.1	17898163
AT1G07430.1	CDY05281	AT3G06610.1	21798944
AT1G07430.1	CDY24678	AT3G06610.1	21798944
AT1G07430.1	CDY34938	AT3G06610.1	21798944
AT1G07430.1	CDY34941	AT3G06610.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030455.1-P	Field mustard	cytosol	50.85	18.87
CDY50002	Canola	cytosol	37.29	12.87
GSMUA_AchrUn_...	Banana	cytosol	54.24	11.31
CDY67257	Canola	nucleus	69.49	11.05
CDY67227	Canola	cytosol	69.49	11.05
CDY01017	Canola	nucleus	67.8	10.18
CDY08530	Canola	nucleus	67.8	10.18
CDY33008	Canola	nucleus, plastid	67.8	10.13
CDY45436	Canola	cytosol	62.71	10.11
KXG35986	Sorghum	cytosol, peroxisome, plastid	33.9	9.85
CDX80307	Canola	nucleus, plastid	66.1	9.85
CDY40181	Canola	cytosol	61.02	9.84
CDY06705	Canola	nucleus	64.41	9.74
VIT_06s0004g05460.t01	Wine grape	nucleus	64.41	9.67
Solyc06g076400.2.1	Tomato	nucleus	66.1	9.51
CDY06259	Canola	nucleus	69.49	9.4
AT1G07430.1	Thale cress	nucleus	69.49	9.28
EER96576	Sorghum	cytosol	55.93	9.24
GSMUA_Achr6P15180_001	Banana	cytosol	57.63	9.19
TraesCS5A01G183600.1	Wheat	peroxisome	54.24	9.17
TraesCS5B01G182000.1	Wheat	peroxisome	54.24	9.17
TraesCS5D01G188600.1	Wheat	peroxisome	54.24	9.17
HORVU3Hr1G085930.3	Barley	nucleus, plastid	61.02	9.16
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	54.24	9.14
CDY10275	Canola	nucleus	66.1	9.07
TraesCS3D01G355900.1	Wheat	plastid	61.02	9.07
TraesCS3A01G362200.1	Wheat	nucleus, plastid	59.32	8.95
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	54.24	8.94
Os01t0846300-01	Rice	cytosol, mitochondrion, nucleus, plastid	62.71	8.94
HORVU4Hr1G060370.1	Barley	nucleus	59.32	8.75
Os09t0325700-01	Rice	cytosol	52.54	8.66
GSMUA_Achr5P29000_001	Banana	cytosol	55.93	8.64
TraesCS4B01G210100.1	Wheat	nucleus	59.32	8.62
GSMUA_Achr11P...	Banana	cytosol	57.63	8.61
Zm00001d042886_P001	Maize	nucleus	59.32	8.58
TraesCS4D01G210900.1	Wheat	nucleus	59.32	8.54
EES01744	Sorghum	plastid	59.32	8.5
Zm00001d012401_P001	Maize	cytosol, mitochondrion, nucleus, plastid	59.32	8.47
TraesCS3B01G394600.3	Wheat	plastid	59.32	8.18
TraesCS4A01G094300.1	Wheat	nucleus	55.93	8.07
CDX83901	Canola	cytosol	47.46	8.0
KXG22152	Sorghum	nucleus	62.71	7.97
Os03t0268600-01	Rice	nucleus	54.24	7.92
Zm00001d028574_P001	Maize	nucleus	52.54	7.83
EER92493	Sorghum	nucleus	52.54	7.73
CDX96761	Canola	cytosol	45.76	7.71
CDY50003	Canola	nucleus	49.15	7.07
CDX92752	Canola	cytosol	49.15	7.07
CDY42756	Canola	cytosol	49.15	7.02
CDY32620	Canola	cytosol	45.76	6.91
CDX94382	Canola	cytosol	49.15	6.9
CDX89368	Canola	cytosol	49.15	6.81
CDY38877	Canola	cytosol	45.76	6.65
CDY38260	Canola	cytosol	47.46	6.64
CDY14318	Canola	nucleus	47.46	6.64
CDY54381	Canola	cytosol, mitochondrion, plastid	47.46	6.62
CDX72943	Canola	cytosol, peroxisome, plastid	45.76	5.68
CDY26234	Canola	cytosol	47.46	5.65
CDY48313	Canola	cytosol	47.46	5.59
CDX96432	Canola	cytosol, peroxisome, plastid	45.76	5.58
CDY53715	Canola	plasma membrane, vacuole	37.29	2.13
CDX93912	Canola	plasma membrane, vacuole	37.29	2.12
CDY36606	Canola	nucleus	5.08	1.2
PGSC0003DMT400049695	Potato	extracellular	0.0	0.0

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	Gene3D:3.60.40.10	MapMan:35.2	GO:A0A078FZ68	UniProt:A0A078FZ68
EnsemblPlants:CDY18067	ProteinID:CDY18067	ProteinID:CDY18067.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00002542001	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PANTHER:PTHR13832	PANTHER:PTHR13832:SF518	SUPFAM:SSF81606	UniParc:UPI0004EDF9AF

Description

BnaA01g23280DBnaA01g23280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZ68]

Coordinates

chrLK032082:-:74081..74682

Molecular Weight (calculated)

6740.0 Da

IEP (calculated)

5.815

GRAVY (calculated)

-0.571

Length

59 amino acids

Sequence
(BLAST)

1: MISESVEKYK TKVKEYSTDH KLDLLDELDR IQEAGGRVIY WDGRRVLGVL ATSRAIGDN

Best Arabidopsis Sequence Match ( AT1G07430.1 )
(BLAST)

001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA

Arabidopsis Description

AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.