Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G06610.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT3G06610.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT3G06610.1 | CDY25761 | AT1G22920.1 | 21798944 |
| AT3G06610.1 | CDY40181 | AT2G29380.1 | 21798944 |
| AT3G06610.1 | CDY45436 | AT2G29380.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040280.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY34938 | Canola | cytosol | 100.0 | 100.0 |
| CDY05281 | Canola | cytosol | 96.52 | 96.52 |
| CDY24678 | Canola | cytosol | 96.52 | 96.52 |
| AT3G06610.1 | Thale cress | cytosol | 92.17 | 92.17 |
| KRH11935 | Soybean | nucleus | 78.26 | 81.82 |
| KRH36967 | Soybean | cytosol | 76.52 | 80.0 |
| PGSC0003DMT400011768 | Potato | cytosol | 75.65 | 79.09 |
| Solyc12g099240.1.1 | Tomato | cytosol | 74.78 | 78.18 |
| VIT_05s0077g00910.t01 | Wine grape | cytosol | 73.91 | 77.27 |
| GSMUA_Achr2P02080_001 | Banana | cytosol | 74.78 | 76.11 |
| EER93155 | Sorghum | cytosol, mitochondrion, nucleus | 71.3 | 66.13 |
| Os03t0832300-01 | Rice | plasma membrane | 72.17 | 65.35 |
| TraesCS4A01G363500.1 | Wheat | cytosol | 70.43 | 63.78 |
| TraesCS5B01G509900.1 | Wheat | cytosol | 70.43 | 63.28 |
| TraesCS5D01G510000.1 | Wheat | cytosol | 70.43 | 63.28 |
| HORVU5Hr1G116650.1 | Barley | mitochondrion | 68.7 | 52.67 |
| Zm00001d042829_P001 | Maize | cytosol | 29.57 | 39.08 |
| Zm00001d038949_P001 | Maize | cytosol | 28.7 | 38.37 |
Protein Annotations
| EnsemblPlants:CDY34941 | EnsemblPlantsGene:GSBRNA2T00057520001 | InterPro:HYPK_UBA | ncoils:Coil | PANTHER:PTHR31184 | ProteinID:CDY34938.1 |
| ProteinID:CDY34941 | ProteinID:CDY34941.1 | SEG:seg | UniParc:UPI0002544B09 | UniProt:A0A078HDN2 | MapMan:35.2 |
Description
BnaA01g32720DBnaA01g32690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDN2]
Coordinates
chrLK032343:-:340039..341126
Molecular Weight (calculated)
12804.1 Da
IEP (calculated)
4.619
GRAVY (calculated)
-0.606
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGEEAGAE IMVDSKDLQQ QSKALDKLTD RVEDRQLDSN RVQSAMASIA ASREADLNAK RLREKELASV KINAADVELI VNELELEKNV VERTLREHKG
101: DAVAATRELL SRYPL
101: DAVAATRELL SRYPL
001: MEGAEEAGAE IAVDSKDLQQ QSKAFDKLTD RVEDRQLDSS RVQSAMASIA ASREADLNAK RLREKELASV KINPADVEFI VNELEIEKNV AERTLREHKG
101: DAVAATRQLL SRYPL
101: DAVAATRQLL SRYPL
Arabidopsis Description
DNA-binding enhancer protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9C901]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.