Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0038g04360.t01 | |
| VIT_06s0004g05460.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G06610.1 | VIT_03s0038g04360.t01 | AT1G22920.1 | 21798944 |
| AT3G06610.1 | VIT_03s0038g04360.t01 | AT1G71230.1 | 21798944 |
| AT3G06610.1 | VIT_06s0004g05460.t01 | AT2G29380.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02360 | Soybean | nucleus | 93.64 | 93.64 |
| KRH50722 | Soybean | endoplasmic reticulum | 90.0 | 90.0 |
| KRH11935 | Soybean | nucleus | 90.0 | 90.0 |
| KRH36967 | Soybean | cytosol | 86.36 | 86.36 |
| PGSC0003DMT400011768 | Potato | cytosol | 85.45 | 85.45 |
| Solyc12g099240.1.1 | Tomato | cytosol | 83.64 | 83.64 |
| GSMUA_Achr2P02080_001 | Banana | cytosol | 84.55 | 82.3 |
| Bra029592.1-P | Field mustard | cytosol | 77.27 | 73.91 |
| CDY34941 | Canola | cytosol | 77.27 | 73.91 |
| CDY34938 | Canola | cytosol | 77.27 | 73.91 |
| CDY24678 | Canola | cytosol | 77.27 | 73.91 |
| CDY05281 | Canola | cytosol | 77.27 | 73.91 |
| Bra040280.1-P | Field mustard | cytosol | 77.27 | 73.91 |
| AT3G06610.1 | Thale cress | cytosol | 76.36 | 73.04 |
| EER93155 | Sorghum | cytosol, mitochondrion, nucleus | 78.18 | 69.35 |
| Os03t0832300-01 | Rice | plasma membrane | 77.27 | 66.93 |
| TraesCS4A01G363500.1 | Wheat | cytosol | 77.27 | 66.93 |
| TraesCS5B01G509900.1 | Wheat | cytosol | 77.27 | 66.41 |
| TraesCS5D01G510000.1 | Wheat | cytosol | 77.27 | 66.41 |
| HORVU5Hr1G116650.1 | Barley | mitochondrion | 76.36 | 56.0 |
| Zm00001d038949_P001 | Maize | cytosol | 33.64 | 43.02 |
| Zm00001d042829_P001 | Maize | cytosol | 33.64 | 42.53 |
Protein Annotations
| EntrezGene:100251666 | wikigene:100251666 | MapMan:35.2 | UniProt:A5C838 | EMBL:AM485603 | ProteinID:CAN70980 |
| ProteinID:CAN70980.1 | ProteinID:CBI22875 | ProteinID:CBI22875.3 | ncoils:Coil | EMBL:FN595246 | InterPro:HYPK_UBA |
| EntrezGene:LOC100251666 | wikigene:LOC100251666 | PANTHER:PTHR31184 | TIGR:TC65727 | UniParc:UPI00015228AF | ArrayExpress:VIT_05s0077g00910 |
| EnsemblPlantsGene:VIT_05s0077g00910 | EnsemblPlants:VIT_05s0077g00910.t01 | RefSeq:XP_002278475 | RefSeq:XP_002278475.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr5:+:690238..694238
Molecular Weight (calculated)
12332.6 Da
IEP (calculated)
4.586
GRAVY (calculated)
-0.513
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVADEGIDR VVDSKDLQQQ SKALDKLTDH VEDRQLDSTR VQEAMASIAA SAEADWNAMR MREKELAAVK INAADVDIIA NELELDKKVA ERTLREHKGD
101: AVAAIRYLLR
101: AVAAIRYLLR
001: MEGAEEAGAE IAVDSKDLQQ QSKAFDKLTD RVEDRQLDSS RVQSAMASIA ASREADLNAK RLREKELASV KINPADVEFI VNELEIEKNV AERTLREHKG
101: DAVAATRQLL SRYPL
101: DAVAATRQLL SRYPL
Arabidopsis Description
DNA-binding enhancer protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9C901]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.