CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02360	Soybean	nucleus	96.36	96.36
VIT_05s0077g00910.t01	Wine grape	cytosol	90.0	90.0
KRH11935	Soybean	nucleus	88.18	88.18
KRH36967	Soybean	cytosol	87.27	87.27
GSMUA_Achr2P02080_001	Banana	cytosol	81.82	79.65
EER93155	Sorghum	cytosol, mitochondrion, nucleus	77.27	68.55
Os03t0832300-01	Rice	plasma membrane	78.18	67.72
TraesCS4A01G363500.1	Wheat	cytosol	75.45	65.35
TraesCS5B01G509900.1	Wheat	cytosol	75.45	64.84
TraesCS5D01G510000.1	Wheat	cytosol	75.45	64.84
HORVU5Hr1G116650.1	Barley	mitochondrion	74.55	54.67
Zm00001d042829_P001	Maize	cytosol	33.64	42.53
Zm00001d038949_P001	Maize	cytosol	32.73	41.86

Protein Annotations

EMBL:ACUP02004712	EMBL:BT092045	EnsemblPlants:KRH50722	EnsemblPlantsGene:GLYMA_07G239500	EntrezGene:100527218	InterPro:HYPK_UBA
ncoils:Coil	PANTHER:PTHR31184	ProteinID:KRH50722	ProteinID:KRH50722.1	SEG:seg	UniParc:UPI0001B15533
UniProt:C6T3N4	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:42039462..42040710

Molecular Weight (calculated)

12346.5 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.696

Length

110 amino acids

Sequence
(BLAST)

001: MEGSDEGVER VVDSKDLQQQ SKAFDKLTDR VEDRQLDSSR VQEAMASIAA SSEADWQAMR KREKELAAVK INAADVDIIA NELELDKKVA ERTLREHKGD
101: AVAAIRHLLR

Best Arabidopsis Sequence Match ( AT3G06610.1 )
(BLAST)

001: MEGAEEAGAE IAVDSKDLQQ QSKAFDKLTD RVEDRQLDSS RVQSAMASIA ASREADLNAK RLREKELASV KINPADVEFI VNELEIEKNV AERTLREHKG
101: DAVAATRQLL SRYPL

Arabidopsis Description

DNA-binding enhancer protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9C901]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.