CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018398.1-P	Field mustard	cytosol	98.09	98.09
CDY45436	Canola	cytosol	98.09	98.09
AT2G29380.1	Thale cress	nucleus	78.96	79.83
CDY18067	Canola	cytosol	9.84	61.02
GSMUA_AchrUn_...	Banana	cytosol	46.72	60.42
CDY06705	Canola	nucleus	63.39	59.49
KXG35986	Sorghum	cytosol, peroxisome, plastid	31.97	57.64
VIT_06s0004g05460.t01	Wine grape	nucleus	60.93	56.74
CDY10275	Canola	nucleus	65.03	55.35
CDX80307	Canola	nucleus, plastid	58.2	53.79
CDY06259	Canola	nucleus	63.93	53.67
CDY33008	Canola	nucleus, plastid	57.65	53.42
CDY67257	Canola	nucleus	54.1	53.37
Solyc06g076400.2.1	Tomato	nucleus	59.56	53.17
CDY67227	Canola	cytosol	53.83	53.1
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	49.73	52.0
TraesCS5A01G183600.1	Wheat	peroxisome	49.45	51.86
GSMUA_Achr6P15180_001	Banana	cytosol	52.19	51.62
EER96576	Sorghum	cytosol	50.27	51.54
TraesCS5D01G188600.1	Wheat	peroxisome	48.91	51.29
CDY08530	Canola	nucleus	54.92	51.15
TraesCS5B01G182000.1	Wheat	peroxisome	48.63	51.0
CDY01017	Canola	nucleus	54.37	50.64
GSMUA_Achr5P29000_001	Banana	cytosol	52.73	50.52
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	49.18	50.28
Os09t0325700-01	Rice	cytosol	49.18	50.28
GSMUA_Achr11P...	Banana	cytosol	53.28	49.37
HORVU3Hr1G085930.3	Barley	nucleus, plastid	50.82	47.33
TraesCS3D01G355900.1	Wheat	plastid	50.82	46.85
TraesCS3A01G362200.1	Wheat	nucleus, plastid	49.73	46.55
Os03t0268600-01	Rice	nucleus	51.37	46.53
Zm00001d028574_P001	Maize	nucleus	50.0	46.21
Os01t0846300-01	Rice	cytosol, mitochondrion, nucleus, plastid	52.19	46.14
Zm00001d042886_P001	Maize	nucleus	51.37	46.08
Zm00001d012401_P001	Maize	cytosol, mitochondrion, nucleus, plastid	51.64	45.76
EES01744	Sorghum	plastid	51.37	45.63
HORVU4Hr1G060370.1	Barley	nucleus	48.91	44.75
TraesCS4B01G210100.1	Wheat	nucleus	49.45	44.58
EER92493	Sorghum	nucleus	48.63	44.39
TraesCS4D01G210900.1	Wheat	nucleus	49.45	44.15
TraesCS4A01G094300.1	Wheat	nucleus	49.18	44.01
TraesCS3B01G394600.3	Wheat	plastid	50.0	42.76
CDY50002	Canola	cytosol	19.67	42.11
CDY36606	Canola	nucleus	28.69	42.0
KXG22152	Sorghum	nucleus	51.09	40.3
CDY38877	Canola	cytosol	41.8	37.68
CDY32620	Canola	cytosol	39.07	36.57
CDX83901	Canola	cytosol	34.97	36.57
CDX96761	Canola	cytosol	34.7	36.29
CDX94382	Canola	cytosol	40.71	35.48
CDX92752	Canola	cytosol	39.62	35.37
CDY50003	Canola	nucleus	39.34	35.12
CDY42756	Canola	cytosol	39.34	34.87
CDX89368	Canola	cytosol	40.44	34.74
CDY14318	Canola	nucleus	39.07	33.89
CDY38260	Canola	cytosol	38.52	33.41
CDY54381	Canola	cytosol, mitochondrion, plastid	38.52	33.33
CDX96432	Canola	cytosol, peroxisome, plastid	39.34	29.75
CDX72943	Canola	cytosol, peroxisome, plastid	38.52	29.68
CDY48313	Canola	cytosol	38.8	28.34
CDY26234	Canola	cytosol	38.25	28.23
PGSC0003DMT400049695	Potato	extracellular	3.01	10.0
CDY53715	Canola	plasma membrane, vacuole	20.77	7.34
CDX93912	Canola	plasma membrane, vacuole	20.77	7.34

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.1	Gene3D:3.60.40.10	GO:A0A078HR64	UniProt:A0A078HR64
EnsemblPlants:CDY40181	ProteinID:CDY40181	ProteinID:CDY40181.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721
GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00069317001
InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF518	SMART:SM00332
SUPFAM:SSF81606	UniParc:UPI0004EE83CC	SEG:seg	:	:	:

Description

BnaC04g14090DBnaC04g14090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HR64]

Coordinates

chrLK032465:-:192138..194059

Molecular Weight (calculated)

40919.3 Da

IEP (calculated)

6.195

GRAVY (calculated)

-0.492

Length

366 amino acids

Sequence
(BLAST)

001: MADICYEVVT DASAYESRPL HSGRRQRFPM DKTVAMQEEW EKKNFKRNKL EALTVRNENV SGESPVTEAS PRYGVSSVCG RRREMEDAVA IHPSFSSHSE
101: YPQHYFGVYD GHGCSHVAAR CRERLHKLVQ EELHSDREEE EHEWRKTMER SFTRMDKEIV LLSESVVSAN CKCELQTPDC DAVGSTAVVS IITTDKIVVA
201: NCGDSRAVLC RNGKPFPLST DHKPDRPDEL DRIEGAGGRV IYWDCPRVLG VLAMSRAIGD NYLKPYVTCE PEVTVTDRTD DDCLILASDG LWDVVSNETA
301: CSVARMCLSG GRRRRGTPEQ AVETISDKAC MEASVLLTKL ALARHSSDNV SVVVIDLRRK GHVTGH

Best Arabidopsis Sequence Match ( AT2G29380.1 )
(BLAST)

001: MAEICYEVVT DACPSSVYES TPAHSRRRPR FQTVMHEDWE KNCKRSKQEA LATRYSSIPR SSREDFSDQN VDVSSPRYGV SSVCGRRREM EDAVAIHPSF
101: SSPKNSEFPQ HYFGVYDGHG CSHVAARCRE RLHKLVQEEL SSDMEDEEEW KTTMERSFTR MDKEVVSWGD SVVTANCKCD LQTPACDSVG STAVVSVITP
201: DKIVVANCGD SRAVLCRNGK PVPLSTDHKP DRPDELDRIE GAGGRVIYWD CPRVLGVLAM SRAIGDNYLK PYVSCEPEVT ITDRRDDDCL ILASDGLWDV
301: VSNETACSVA RMCLRGGGRR QDNEDPAISD KACTEASVLL TKLALARNSS DNVSVVVIDL RR

Arabidopsis Description

HAI3HAI3 [Source:UniProtKB/TrEMBL;Acc:A0A178VWK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.